Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 OR5H3P-201ENST00000502817 919 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC139713.1-202ENST00000512366 460 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC008429.4-201ENST00000521201 182 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RAB11AP2-201ENST00000545905 639 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC087883.1-201ENST00000551882 391 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RPS3AP4-201ENST00000555161 764 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC011270.1-201ENST00000558606 583 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AL589743.6-201ENST00000611025 117 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 GMFB-210ENST00000628554 639 ntTSL 4 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 UGP2-232ENST00000640075 567 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AL355488.2-201ENST00000609909 2850 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 AC130360.2-201ENST00000533477 1556 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 CASC19-260ENST00000641828 2001 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 SAMM50P1-201ENST00000455403 1399 ntBASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
CCDC39Q9UFE4 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 ARSFP1-201ENST00000398758 477 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL021331.1-201ENST00000402817 582 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL033519.1-201ENST00000407266 307 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 GLS-204ENST00000409428 816 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 RNU2-16P-201ENST00000410712 136 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 USP9YP33-201ENST00000412220 421 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 CCDC58P2-201ENST00000417131 366 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 EIF1P1-201ENST00000421436 341 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 RWDD4P2-201ENST00000426392 563 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 MTND1P14-201ENST00000427400 950 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 OFD1P13Y-201ENST00000431179 1232 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 PSMD8P1-201ENST00000436275 769 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL445991.1-201ENST00000450381 475 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 OR52E3P-201ENST00000452083 936 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC090543.1-201ENST00000492168 485 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC114324.2-202ENST00000503812 134 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC092593.2-201ENST00000513866 913 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC097486.1-201ENST00000515331 210 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 OR4A43P-201ENST00000532938 908 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 TPRX1P1-201ENST00000557620 319 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC009120.3-201ENST00000563335 499 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC127024.5-201ENST00000580085 462 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 MIR4732-201ENST00000581873 76 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC024267.2-201ENST00000582737 417 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 MIR3611-201ENST00000584484 83 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC025857.2-201ENST00000602711 238 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL390877.1-201ENST00000605704 214 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AL021368.3-201ENST00000607119 578 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC126118.1-201ENST00000607744 628 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC092653.1-201ENST00000608509 531 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC012676.3-201ENST00000614983 479 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC009120.7-201ENST00000623452 780 ntBASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms