Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC104581.5-201ENST00000624171 7141 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MFSD8-217ENST00000641178 4374 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC009313.2-201ENST00000417893 1941 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 Y_RNA.303-201ENST00000364998 94 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 RPS3AP24-201ENST00000407896 734 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MIR1231-201ENST00000408101 92 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 RN7SKP236-201ENST00000410635 284 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SNX18P13-201ENST00000412442 529 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 BX295541.1-201ENST00000417774 250 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 C1DP2-201ENST00000418167 426 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL157884.1-201ENST00000424561 454 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC233728.2-201ENST00000425348 757 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SKP1P1-201ENST00000438081 489 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL161626.1-201ENST00000441480 490 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL671855.1-201ENST00000446875 1203 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC103563.5-201ENST00000455643 364 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC090142.1-201ENST00000465776 462 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL672167.3-201ENST00000465951 960 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC006511.1-201ENST00000470614 315 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 FCF1P3-201ENST00000496394 590 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ENPP7P3-201ENST00000509123 241 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC018552.1-201ENST00000562099 811 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MIR4637-201ENST00000582405 84 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 RN7SL667P-201ENST00000582817 298 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MAGOH2P-202ENST00000584384 429 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC006116.6-201ENST00000593258 1103 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC036176.3-201ENST00000602456 418 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 LARP7P1-201ENST00000605576 316 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC091965.4-201ENST00000607691 587 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC009237.17-201ENST00000618111 748 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 BX005040.2-201ENST00000620504 370 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC073488.7-201ENST00000633785 778 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 MIR6863-201ENST00000636112 90 ntBASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 AC100810.3-201ENST00000633189 2240 ntBASIC5.59□□□□□ -1.52
CCDC140Q96MF4 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 APP-206ENST00000359726 3294 ntTSL 2 BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.59□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms