Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LYST-202ENST00000389794 12985 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
FOXA3P55318 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC120338.1-201ENST00000625074 1541 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC104966.1-201ENST00000467010 1464 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 AC114786.1-201ENST00000512892 1415 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 CASC19-206ENST00000641028 1430 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA3P55318 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 AL050305.1-201ENST00000399993 1230 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 OR4K12P-201ENST00000406538 961 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 CKS1BP6-201ENST00000424932 240 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA3P55318 GAPDHP34-201ENST00000432112 823 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 GSTM5P1-201ENST00000434751 660 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC108751.2-201ENST00000469993 231 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 SNRPCP11-201ENST00000492453 205 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 NRBF2P4-201ENST00000520874 850 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC005868.1-201ENST00000536421 331 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 CYCSP38-201ENST00000559840 322 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 AC096553.1-201ENST00000605169 829 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.81□□□□□ -1.8
FOXA3P55318 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 AL513548.1-201ENST00000562904 1724 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA3P55318 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA3P55318 MAPK10-286ENST00000641208 8747 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 AL034370.1-201ENST00000397254 1590 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AC091305.2-201ENST00000624049 1576 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA3P55318 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA3P55318 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA3P55318 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC092111.2-201ENST00000611627 1414 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
FOXA3P55318 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 RNA5SP394-201ENST00000364216 119 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 RNA5SP433-201ENST00000364491 114 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA3P55318 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 MIR551B-201ENST00000384984 96 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
FOXA3P55318 HMGB1P20-201ENST00000402555 677 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 ARL4AP3-201ENST00000441452 574 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 PCNPP2-201ENST00000441651 455 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AC105399.1-202ENST00000447303 205 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 MTND6P5-201ENST00000448266 512 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC021006.1-201ENST00000489849 553 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 RPEP1-201ENST00000504507 658 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC3.8□□□□□ -1.8
FOXA3P55318 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC018797.1-201ENST00000510791 255 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 SNORA70.20-201ENST00000516848 126 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 OR4A41P-201ENST00000533053 928 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA3P55318 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC3.8□□□□□ -1.8
FOXA3P55318 AC068305.2-201ENST00000550567 1205 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA3P55318 PDCD6IPP2-207ENST00000566321 1069 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms