Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 RNA5SP477-201ENST00000362639 119 ntBASIC4.68□□□□□ -1.66
CDX1P47902 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CDX1P47902 RPS27AP11-201ENST00000402798 447 ntBASIC4.68□□□□□ -1.66
CDX1P47902 PTGES3P2-201ENST00000407942 482 ntBASIC4.68□□□□□ -1.66
CDX1P47902 RNU2-17P-201ENST00000410290 190 ntBASIC4.68□□□□□ -1.66
CDX1P47902 RNU4-74P-201ENST00000411280 161 ntBASIC4.68□□□□□ -1.66
CDX1P47902 OR13Z1P-201ENST00000416141 834 ntBASIC4.68□□□□□ -1.66
CDX1P47902 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 AC019205.1-201ENST00000421830 730 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AL512593.1-201ENST00000444758 779 ntBASIC4.68□□□□□ -1.66
CDX1P47902 NPM1P39-201ENST00000449818 867 ntBASIC4.68□□□□□ -1.66
CDX1P47902 RSU1P1-201ENST00000453416 441 ntBASIC4.68□□□□□ -1.66
CDX1P47902 RPL7P48-201ENST00000461513 746 ntBASIC4.68□□□□□ -1.66
CDX1P47902 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 AC084754.1-201ENST00000463466 464 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AL122020.1-201ENST00000472287 459 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC4.68□□□□□ -1.66
CDX1P47902 RWDD4P1-201ENST00000488019 565 ntBASIC4.68□□□□□ -1.66
CDX1P47902 OR7E157P-201ENST00000494376 911 ntBASIC4.68□□□□□ -1.66
CDX1P47902 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.68□□□□□ -1.66
CDX1P47902 AC025459.1-201ENST00000504072 156 ntBASIC4.68□□□□□ -1.66
CDX1P47902 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.68□□□□□ -1.66
CDX1P47902 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 TRIM51DP-201ENST00000529746 596 ntBASIC4.68□□□□□ -1.66
CDX1P47902 OR4R2P-201ENST00000530815 597 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 OTX2-203ENST00000554559 715 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CDX1P47902 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CDX1P47902 AC119403.2-201ENST00000590960 598 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AP000720.1-201ENST00000625091 483 ntBASIC4.68□□□□□ -1.66
CDX1P47902 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.68□□□□□ -1.66
CDX1P47902 AC129915.3-201ENST00000634128 948 ntBASIC4.68□□□□□ -1.66
CDX1P47902 FRG1DP-201ENST00000635586 771 ntBASIC4.68□□□□□ -1.66
CDX1P47902 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.68□□□□□ -1.66
CDX1P47902 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
CDX1P47902 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CDX1P47902 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 RNA5SP273-201ENST00000362484 113 ntBASIC4.67□□□□□ -1.66
CDX1P47902 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 RNU6-452P-201ENST00000384406 107 ntBASIC4.67□□□□□ -1.66
CDX1P47902 RN7SKP166-201ENST00000410812 305 ntBASIC4.67□□□□□ -1.66
CDX1P47902 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CDX1P47902 XKRYP4-201ENST00000414395 483 ntBASIC4.67□□□□□ -1.66
CDX1P47902 BX284632.2-201ENST00000421091 399 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AL035660.1-201ENST00000422041 222 ntBASIC4.67□□□□□ -1.66
CDX1P47902 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 BX119904.1-201ENST00000432026 348 ntBASIC4.67□□□□□ -1.66
CDX1P47902 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.67□□□□□ -1.66
CDX1P47902 RPS23P9-201ENST00000448848 438 ntBASIC4.67□□□□□ -1.66
CDX1P47902 XKRYP5-201ENST00000449659 483 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AC243772.1-201ENST00000451620 410 ntBASIC4.67□□□□□ -1.66
CDX1P47902 HMGB1P26-201ENST00000452520 628 ntBASIC4.67□□□□□ -1.66
CDX1P47902 GEMIN2P1-201ENST00000454246 752 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 RN7SL346P-201ENST00000491561 294 ntBASIC4.67□□□□□ -1.66
CDX1P47902 RN7SL193P-201ENST00000491708 276 ntBASIC4.67□□□□□ -1.66
CDX1P47902 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.67□□□□□ -1.66
CDX1P47902 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 146.4 ms