Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
BRCA1P38398 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.1□□□□□ -1.43
BRCA1P38398 SNORA70.9-201ENST00000384370 135 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 MIR298-201ENST00000401212 88 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 GPS2P1-201ENST00000411761 986 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 AF186996.5-201ENST00000418098 904 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.1□□□□□ -1.43
BRCA1P38398 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.1□□□□□ -1.43
BRCA1P38398 AC010326.1-201ENST00000462726 602 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 RN7SL244P-201ENST00000493405 297 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.1□□□□□ -1.43
BRCA1P38398 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
BRCA1P38398 AC093227.2-201ENST00000589357 285 ntBASIC6.1□□□□□ -1.43
BRCA1P38398 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.1□□□□□ -1.43
BRCA1P38398 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
BRCA1P38398 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.1□□□□□ -1.43
BRCA1P38398 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.09□□□□□ -1.43
BRCA1P38398 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.09□□□□□ -1.43
BRCA1P38398 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.09□□□□□ -1.43
BRCA1P38398 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 RPL32P23-201ENST00000397237 405 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 RNA5SP44-201ENST00000410446 133 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.09□□□□□ -1.43
BRCA1P38398 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.09□□□□□ -1.43
BRCA1P38398 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.09□□□□□ -1.43
BRCA1P38398 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.09□□□□□ -1.43
BRCA1P38398 AC020779.1-201ENST00000478757 796 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.09□□□□□ -1.43
BRCA1P38398 AC007224.1-201ENST00000564410 144 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.09□□□□□ -1.43
BRCA1P38398 AC015712.7-201ENST00000615211 635 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 AP000843.1-201ENST00000624880 701 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 AC093671.1-201ENST00000624981 2929 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
BRCA1P38398 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.09□□□□□ -1.43
BRCA1P38398 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.09□□□□□ -1.43
BRCA1P38398 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 AL033543.1-201ENST00000623440 13454 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BRCA1P38398 AC079298.1-201ENST00000625026 1619 ntBASIC6.09□□□□□ -1.43
BRCA1P38398 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.09□□□□□ -1.44
BRCA1P38398 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.44
BRCA1P38398 OR4K17-201ENST00000315543 1032 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.44
BRCA1P38398 ST13P16-201ENST00000401760 781 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6.09□□□□□ -1.44
BRCA1P38398 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.09□□□□□ -1.44
BRCA1P38398 RPEP3-201ENST00000425462 676 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 RPL7AP61-201ENST00000443410 636 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 HMGN1P9-201ENST00000515212 298 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 NPM1P6-201ENST00000521088 871 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.09□□□□□ -1.44
BRCA1P38398 MIR4429-201ENST00000580105 73 ntBASIC6.09□□□□□ -1.44
BRCA1P38398 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.09□□□□□ -1.44
BRCA1P38398 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.09□□□□□ -1.44
BRCA1P38398 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.09□□□□□ -1.44
BRCA1P38398 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.09□□□□□ -1.44
BRCA1P38398 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
BRCA1P38398 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 AC125257.1-201ENST00000560400 2930 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
BRCA1P38398 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.08□□□□□ -1.44
BRCA1P38398 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 RNA5SP509-201ENST00000364577 119 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BRCA1P38398 OR6C69P-201ENST00000394268 893 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC6.08□□□□□ -1.44
BRCA1P38398 TAAR4P-201ENST00000454843 1039 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 SNORA84-201ENST00000459229 133 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 AC093827.1-201ENST00000480094 861 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 IMPA1P1-201ENST00000510718 842 ntBASIC6.08□□□□□ -1.44
BRCA1P38398 IGKV3OR22-2-201ENST00000517943 313 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms