Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SHMT2P34897 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 AC114947.2-201ENST00000565748 2125 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SHMT2P34897 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
SHMT2P34897 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
SHMT2P34897 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 SNORA17.1-201ENST00000362945 126 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 U3.2-201ENST00000362981 210 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 RNU1-146P-201ENST00000364015 165 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 OR1L6-202ENST00000373684 1044 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 MIR1178-201ENST00000408396 91 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 SNORA81-201ENST00000408493 178 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.11□□□□□ -1.59
SHMT2P34897 AL139148.1-201ENST00000427122 680 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SHMT2P34897 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 HSPD1P12-201ENST00000429127 1069 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 AL161722.2-201ENST00000434731 981 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.11□□□□□ -1.59
SHMT2P34897 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 CBX1P5-201ENST00000475330 559 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 AL049874.2-201ENST00000492636 288 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 AC072052.1-201ENST00000496556 306 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 IMPA1P1-201ENST00000510718 842 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SHMT2P34897 HAUS8P1-201ENST00000549005 542 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.11□□□□□ -1.59
SHMT2P34897 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.11□□□□□ -1.59
SHMT2P34897 AC095055.1-201ENST00000603472 1113 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 TRIM51GP-201ENST00000534741 1350 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 AC123912.3-201ENST00000600907 1367 ntBASIC5.11□□□□□ -1.59
SHMT2P34897 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.11□□□□□ -1.59
SHMT2P34897 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
SHMT2P34897 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SHMT2P34897 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 MUC2-202ENST00000613187 4845 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 OR9G4-201ENST00000302957 984 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 RNU1-43P-201ENST00000365052 165 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 SNORA48.4-201ENST00000391089 134 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 OR8V1P-201ENST00000395193 873 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 DUTP5-201ENST00000406790 469 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 RNU4-34P-201ENST00000410431 124 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 RANP7-201ENST00000418085 644 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 RPL19P16-201ENST00000433839 588 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.1□□□□□ -1.59
SHMT2P34897 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC012512.1-201ENST00000446594 718 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AURKAPS1-201ENST00000451805 1212 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 RN7SL222P-201ENST00000476452 299 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AC093827.1-201ENST00000480094 861 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.1□□□□□ -1.59
SHMT2P34897 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.1□□□□□ -1.59
SHMT2P34897 RPS12P31-201ENST00000491419 398 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 RNA5SP92-201ENST00000516437 110 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC022832.1-201ENST00000530718 645 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 OR10G5P-201ENST00000532733 358 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC127381.1-201ENST00000555979 939 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.1□□□□□ -1.59
SHMT2P34897 OR7E18P-201ENST00000592589 702 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 SDR42E1P1-201ENST00000611327 477 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AL121612.2-201ENST00000612261 482 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 AC135068.12-201ENST00000637370 931 ntBASIC5.1□□□□□ -1.59
SHMT2P34897 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SHMT2P34897 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SHMT2P34897 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.1□□□□□ -1.59
SHMT2P34897 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms