Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 RNA5SP394-201ENST00000364216 119 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 RNU6-1257P-201ENST00000384625 110 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 NPM1P38-201ENST00000403835 865 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC069282.1-201ENST00000411911 526 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 RCC2P2-201ENST00000422174 918 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.89□□□□□ -1.63
LMX1BO60663 MORF4L1P7-201ENST00000426038 703 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC127526.2-201ENST00000426436 775 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.89□□□□□ -1.63
LMX1BO60663 NPM1P18-201ENST00000434232 732 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AL359265.1-201ENST00000440296 795 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 EEF1B2P6-201ENST00000445713 673 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 AL139824.2-201ENST00000458731 1095 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 OR2AO1P-201ENST00000476497 403 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 RPS23P1-201ENST00000491662 432 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 SCARNA6.1-201ENST00000516989 238 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 SNORA43.3-201ENST00000517240 103 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 AL049872.1-201ENST00000556323 322 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 HMGN2P47-201ENST00000559378 272 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 RN7SL339P-201ENST00000580597 296 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC4.89□□□□□ -1.63
LMX1BO60663 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 AL583832.1-201ENST00000603227 784 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 KATNBL1P5-201ENST00000605015 517 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC112220.2-201ENST00000605513 533 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC084036.1-201ENST00000609190 508 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 RN7SL544P-201ENST00000617232 284 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AL590410.1-201ENST00000617925 333 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 RN7SL763P-201ENST00000620922 284 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC068880.4-201ENST00000623082 495 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AL109659.3-201ENST00000624985 950 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 TMEM30CP-203ENST00000637814 1035 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC144833.1-201ENST00000567953 4089 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LMX1BO60663 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LMX1BO60663 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 OR4F13P-202ENST00000560066 2054 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 AC016745.2-201ENST00000608834 3443 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
LMX1BO60663 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
LMX1BO60663 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.88□□□□□ -1.63
LMX1BO60663 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LMX1BO60663 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LMX1BO60663 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LMX1BO60663 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LMX1BO60663 SNORA58B-201ENST00000364259 136 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 SNORD51.1-201ENST00000365405 77 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LMX1BO60663 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LMX1BO60663 SPTLC1P2-201ENST00000407089 121 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 RPS3AP25-201ENST00000411660 793 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC4.88□□□□□ -1.63
LMX1BO60663 TNPO1P1-201ENST00000423641 1138 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.88□□□□□ -1.63
LMX1BO60663 AL662874.1-201ENST00000426065 230 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 RPS27AP6-201ENST00000427962 448 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 AL512637.2-201ENST00000431287 1256 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LMX1BO60663 RPS27P18-201ENST00000431701 247 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.88□□□□□ -1.63
LMX1BO60663 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC4.88□□□□□ -1.63
LMX1BO60663 XKRY2-201ENST00000442362 1093 ntBASIC4.88□□□□□ -1.63
LMX1BO60663 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms