Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC013244.1-201ENST00000604279 193 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RPSAP73-201ENST00000614820 330 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RNA5SP439-201ENST00000617595 124 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC015660.5-201ENST00000623238 564 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC114947.2-201ENST00000565748 2125 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 MIR765-201ENST00000390226 114 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC020779.1-201ENST00000478757 796 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC097173.1-201ENST00000505862 819 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 NPM1P52-201ENST00000518264 846 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AL121612.2-201ENST00000612261 482 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 AC002044.3-201ENST00000623314 541 ntBASIC5.24□□□□□ -1.57
LHX3Q9UBR4 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.24□□□□□ -1.57
LHX3Q9UBR4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 SNURFL-201ENST00000309296 343 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 RNA5SP223-201ENST00000365174 120 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AL034379.1-201ENST00000423216 253 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 GAPDHP58-201ENST00000438477 1006 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 RPSAP50-201ENST00000481955 852 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 HMGN2P47-201ENST00000559378 272 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 MTCYBP13-201ENST00000578634 1093 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC011447.4-201ENST00000587562 111 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 BNIP3P35-201ENST00000604530 490 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AL445222.1-201ENST00000607259 628 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms