Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 OR5T3-201ENST00000303059 1023 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 MIR600-201ENST00000385007 98 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 RANP7-201ENST00000418085 644 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 RPS21P4-201ENST00000487122 248 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AGGF1P3-201ENST00000493675 1213 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 CCNHP1-201ENST00000513311 678 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 HNRNPRP2-201ENST00000528421 743 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AL049779.2-201ENST00000553847 315 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 OR11J2P-201ENST00000555298 907 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AC012146.2-201ENST00000576545 416 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AL049840.6-202ENST00000603373 279 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AC007620.3-201ENST00000608131 497 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 AC011447.7-201ENST00000624228 1590 ntBASIC5.49□□□□□ -1.53
SIX2Q9NPC8 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SIX2Q9NPC8 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AL450023.3-201ENST00000440592 271 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 RPS17P2-201ENST00000461663 408 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 COPS8P2-201ENST00000473228 627 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 BX510359.5-201ENST00000515651 304 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AP006245.2-201ENST00000522004 300 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AC116553.2-201ENST00000564203 463 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 MIR4310-201ENST00000582950 57 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 OR7A8P-201ENST00000595427 913 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 SAMMSON-227ENST00000642114 1199 ntBASIC5.48□□□□□ -1.53
SIX2Q9NPC8 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SIX2Q9NPC8 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AC104623.2-202ENST00000623477 4002 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 SNORA77-201ENST00000408716 125 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 RN7SKP114-201ENST00000410327 279 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 SLC35E1P1-201ENST00000419313 864 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 RPL12P11-201ENST00000439970 501 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 MTND2P3-201ENST00000452458 470 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AC092647.2-201ENST00000452998 253 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AL356981.1-201ENST00000454879 684 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 RN7SL443P-201ENST00000464331 290 ntBASIC5.47□□□□□ -1.53
SIX2Q9NPC8 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.47□□□□□ -1.53
SIX2Q9NPC8 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms