Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 SOCS5P3-201ENST00000425115 1576 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC005294.1-201ENST00000355509 281 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 RNU6-1331P-201ENST00000363658 106 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 SNORA67-201ENST00000384423 137 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AL355994.1-201ENST00000424379 260 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC093655.2-201ENST00000425735 631 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC009784.1-201ENST00000426484 460 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 UBE2V2P1-201ENST00000434717 398 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 MTCYBP14-201ENST00000457471 715 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 RPS21P4-201ENST00000487122 248 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 PGAM1P13-201ENST00000507497 754 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 NMNAT1P5-201ENST00000559657 841 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 RPL10P14-201ENST00000565265 298 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 MIR4489-201ENST00000578869 62 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC009027.1-201ENST00000604510 479 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS35Q96QK1 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 AC079298.1-201ENST00000625026 1619 ntBASIC5.3□□□□□ -1.56
VPS35Q96QK1 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 RNU1-149P-201ENST00000390870 161 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 OR4K12P-201ENST00000406538 961 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AL445213.1-201ENST00000412589 747 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC108075.1-201ENST00000424692 529 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC124944.2-201ENST00000429866 1242 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC016772.1-201ENST00000444170 1261 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 TAAR4P-201ENST00000454843 1039 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 RPL7P40-201ENST00000481703 745 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC058823.1-201ENST00000485315 474 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 RNU6-941P-201ENST00000516346 108 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC022360.1-201ENST00000521058 340 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC090022.1-201ENST00000546569 311 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 SETP1-201ENST00000556014 845 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC108738.1-201ENST00000603703 237 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 SUMO2P15-201ENST00000604285 278 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AL512329.2-201ENST00000607350 548 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 MIR6826-201ENST00000617808 98 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms