Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AL121886.1-201ENST00000358609 435 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 MIR133B-201ENST00000362210 119 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 SNORA67-201ENST00000384423 137 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC104297.1-201ENST00000393779 870 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 HMGB3P7-201ENST00000400214 611 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AL133388.1-201ENST00000404509 287 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RAB28P3-201ENST00000448325 597 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 HIGD1AP8-201ENST00000453927 274 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 C1DP3-201ENST00000455013 423 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 PDCL3P4-201ENST00000489621 720 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 OR1F2P-201ENST00000570470 933 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RBM22P1-201ENST00000578589 1214 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 FAM106CP-201ENST00000582212 507 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC060766.1-201ENST00000590824 627 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC074101.1-201ENST00000637861 241 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 SAMM50P1-201ENST00000455403 1399 ntBASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
HDDC3Q8N4P3 AL359955.1-201ENST00000455242 3275 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 RPSAP35-201ENST00000413753 818 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 OR51A6P-201ENST00000418680 1004 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC093162.1-201ENST00000419682 124 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 SRSF1P1-201ENST00000424058 520 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC108075.1-201ENST00000424692 529 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 Z80107.2-201ENST00000445127 392 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 HMGN1P8-201ENST00000463578 288 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 SNRPCP3-201ENST00000474888 476 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 MTND6P2-201ENST00000512226 524 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 HMGB1P40-201ENST00000525121 540 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC015922.4-201ENST00000612568 690 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC015722.2-201ENST00000622210 551 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC232271.1-201ENST00000602455 2715 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 UGT2B24P-201ENST00000514441 1597 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 NLRP3P1-201ENST00000622303 1785 ntBASIC5.5□□□□□ -1.53
HDDC3Q8N4P3 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 OR4F13P-202ENST00000560066 2054 ntBASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HDDC3Q8N4P3 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms