| PTPN11 | Q06124 | MCCC1-210 | ENST00000492597 | 2774 nt | TSL 1 (best) BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL354854.1-201 | ENST00000455940 | 1363 nt | BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | LINC01192-202 | ENST00000470546 | 1519 nt | TSL 1 (best) BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | GTPBP8-205 | ENST00000473129 | 1518 nt | TSL 2 BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CASC19-228 | ENST00000641414 | 1684 nt | BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | MEF2C-225 | ENST00000625585 | 3467 nt | APPRIS ALT1 TSL 5 BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | TLR4-202 | ENST00000394487 | 3908 nt | TSL 1 (best) BASIC | 7.06 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC104162.1-201 | ENST00000430831 | 2382 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC000367.1-201 | ENST00000452711 | 1766 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | OR1E1-201 | ENST00000322608 | 1307 nt | APPRIS P1 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | SMC1A-201 | ENST00000322213 | 9784 nt | APPRIS P1 TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | FAM19A1-201 | ENST00000478136 | 2014 nt | APPRIS P1 TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC087359.1-201 | ENST00000508335 | 1740 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC073429.2-201 | ENST00000569694 | 1444 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | SPA17-201 | ENST00000227135 | 853 nt | APPRIS P1 TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | OR11H6-201 | ENST00000315519 | 993 nt | APPRIS P1 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | SLAMF6-201 | ENST00000368055 | 730 nt | TSL 2 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | SUGT1P2-201 | ENST00000379452 | 992 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC008171.1-201 | ENST00000395058 | 200 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RPS27AP11-201 | ENST00000402798 | 447 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RNU2-16P-201 | ENST00000410712 | 136 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC104777.1-202 | ENST00000413247 | 774 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC093157.1-203 | ENST00000416329 | 713 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC022173.1-201 | ENST00000418554 | 577 nt | TSL 4 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL020993.1-201 | ENST00000420172 | 297 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RPS3P2-201 | ENST00000421346 | 701 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC130360.1-201 | ENST00000425489 | 1117 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC009784.1-201 | ENST00000426484 | 460 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | ZMYM4-AS1-201 | ENST00000432683 | 459 nt | TSL 2 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | LINC00595-203 | ENST00000432742 | 683 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC025038.1-201 | ENST00000433249 | 336 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | ATP5LP2-201 | ENST00000440646 | 311 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL357520.1-201 | ENST00000441557 | 453 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | MLIP-IT1-201 | ENST00000441845 | 643 nt | TSL 2 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC097499.1-201 | ENST00000444277 | 208 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | SPANXB1-201 | ENST00000449283 | 469 nt | APPRIS P1 TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL139156.3-201 | ENST00000454802 | 394 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC010149.1-201 | ENST00000455357 | 571 nt | TSL 4 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RPL7P1-201 | ENST00000468161 | 747 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RPL7P9-201 | ENST00000468715 | 747 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC107398.1-201 | ENST00000486904 | 505 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RN7SL714P-201 | ENST00000487050 | 298 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC055758.1-201 | ENST00000494509 | 569 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | MTND6P8-201 | ENST00000503471 | 522 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | GYPA-203 | ENST00000503627 | 318 nt | TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC139713.2-213 | ENST00000505000 | 796 nt | TSL 2 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC093903.1-201 | ENST00000507220 | 405 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CR383658.1-201 | ENST00000514609 | 734 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | HAND2-AS1-235 | ENST00000515376 | 951 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | NDUFA5P2-201 | ENST00000519723 | 344 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | IGHV3-57-201 | ENST00000520143 | 280 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC023202.1-201 | ENST00000521681 | 491 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC130365.2-201 | ENST00000525882 | 1201 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | HIGD1AP10-201 | ENST00000527837 | 282 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AP000873.5-201 | ENST00000533906 | 236 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC244502.2-201 | ENST00000543361 | 851 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | LINC01580-202 | ENST00000555364 | 661 nt | TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL356022.1-202 | ENST00000555433 | 379 nt | TSL 2 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC048382.2-201 | ENST00000560239 | 492 nt | TSL 2 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC009019.1-202 | ENST00000568410 | 405 nt | TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC024361.3-201 | ENST00000570919 | 333 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AP005209.1-201 | ENST00000582531 | 928 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC100781.1-203 | ENST00000598549 | 399 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC011445.2-201 | ENST00000599274 | 173 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL953862.2-201 | ENST00000603089 | 820 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL135786.2-201 | ENST00000608422 | 615 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC087241.4-201 | ENST00000612441 | 480 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL445647.2-201 | ENST00000615170 | 130 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC099842.1-201 | ENST00000619919 | 596 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RPL23AP61-201 | ENST00000623642 | 466 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | OR5D13-201 | ENST00000623930 | 945 nt | APPRIS P1 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | MIR4278-201 | ENST00000636094 | 69 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | LEUTX-202 | ENST00000638280 | 667 nt | APPRIS P1 TSL 3 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | NAMPTP1-201 | ENST00000440465 | 2514 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | FOXJ3-209 | ENST00000545068 | 5165 nt | APPRIS P3 TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | HHLA2-206 | ENST00000467761 | 2379 nt | APPRIS P3 TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL390726.6-201 | ENST00000637760 | 1654 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CYP3A5-202 | ENST00000339843 | 3320 nt | TSL 1 (best) BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC241584.2-201 | ENST00000637142 | 2090 nt | BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CLTC-210 | ENST00000579456 | 2301 nt | TSL 5 BASIC | 7.05 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | IARS-202 | ENST00000375643 | 4656 nt | APPRIS P1 TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | ZFX-202 | ENST00000338565 | 2906 nt | TSL 5 BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CNTN5-202 | ENST00000418526 | 3679 nt | APPRIS ALT2 TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CLEC5A-206 | ENST00000546910 | 3511 nt | APPRIS P1 TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | BNC2-203 | ENST00000380672 | 12844 nt | APPRIS P2 TSL 2 BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC005154.1-228 | ENST00000454922 | 1405 nt | TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AC062022.1-201 | ENST00000451026 | 1684 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | PROX1-203 | ENST00000435016 | 3075 nt | APPRIS P1 TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RPL39P5-201 | ENST00000273411 | 449 nt | TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | Y_RNA.3-201 | ENST00000362331 | 103 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RNA5SP346-201 | ENST00000363541 | 121 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | Y_RNA.192-201 | ENST00000363977 | 102 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RNU6-353P-201 | ENST00000364266 | 108 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | snoZ40.1-201 | ENST00000364540 | 72 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | CD84-205 | ENST00000368051 | 965 nt | APPRIS ALT2 TSL 1 (best) BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | ZBTB8OS-202 | ENST00000373501 | 598 nt | TSL 5 BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | RNU4-31P-201 | ENST00000384211 | 141 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | Y_RNA.560-201 | ENST00000384689 | 102 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | AL031985.1-201 | ENST00000392713 | 418 nt | BASIC | 7.04 | □□□□□ -1.28 | | |
| PTPN11 | Q06124 | LYST-AS1-201 | ENST00000412098 | 521 nt | TSL 3 BASIC | 7.04 | □□□□□ -1.28 | | |