Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MRPS6P2-201ENST00000381143 370 ntBASIC5.85□□□□□ -1.47
MSX2P35548 MIR138-2-201ENST00000384916 84 ntBASIC5.85□□□□□ -1.47
MSX2P35548 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSX2P35548 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 HMGB1P10-201ENST00000395823 563 ntBASIC5.85□□□□□ -1.47
MSX2P35548 SNORA77.2-201ENST00000408571 112 ntBASIC5.85□□□□□ -1.47
MSX2P35548 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 TNPO1P1-201ENST00000423641 1138 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AL593851.1-201ENST00000426171 157 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 OR52S1P-201ENST00000427016 937 ntBASIC5.85□□□□□ -1.47
MSX2P35548 IFNNP1-201ENST00000429219 553 ntBASIC5.85□□□□□ -1.47
MSX2P35548 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 PA2G4P1-201ENST00000442248 1197 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 MRPL35P2-201ENST00000448009 511 ntBASIC5.85□□□□□ -1.47
MSX2P35548 CYCSP42-201ENST00000450823 238 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AC239798.3-201ENST00000454459 408 ntBASIC5.85□□□□□ -1.47
MSX2P35548 NDUFA12P1-201ENST00000455914 406 ntBASIC5.85□□□□□ -1.47
MSX2P35548 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.85□□□□□ -1.47
MSX2P35548 RPL23AP44-201ENST00000482216 473 ntBASIC5.85□□□□□ -1.47
MSX2P35548 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 ST13P12-201ENST00000508958 1094 ntBASIC5.85□□□□□ -1.47
MSX2P35548 CFI-204ENST00000510800 667 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 TPM3P3-201ENST00000521343 354 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AC136777.2-201ENST00000522979 358 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 AC021483.2-201ENST00000567415 758 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AC002400.1-201ENST00000569310 726 ntBASIC5.85□□□□□ -1.47
MSX2P35548 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 MIR4433B-201ENST00000581329 102 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 AP001269.3-201ENST00000588718 329 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC078795.2-201ENST00000602835 1252 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AL591222.2-201ENST00000604443 754 ntBASIC5.85□□□□□ -1.47
MSX2P35548 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC005021.1-201ENST00000608730 355 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AL359513.1-201ENST00000614364 557 ntBASIC5.85□□□□□ -1.47
MSX2P35548 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC116165.2-201ENST00000616705 206 ntBASIC5.85□□□□□ -1.47
MSX2P35548 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSX2P35548 AC091931.1-201ENST00000623488 728 ntBASIC5.85□□□□□ -1.47
MSX2P35548 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
MSX2P35548 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSX2P35548 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
MSX2P35548 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
MSX2P35548 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
MSX2P35548 AC023490.2-201ENST00000359859 470 ntBASIC5.84□□□□□ -1.47
MSX2P35548 U3.10-201ENST00000364459 214 ntBASIC5.84□□□□□ -1.47
MSX2P35548 SNORD116.1-201ENST00000365628 92 ntBASIC5.84□□□□□ -1.47
MSX2P35548 RNU6-932P-201ENST00000391108 106 ntBASIC5.84□□□□□ -1.47
MSX2P35548 ATP5F1P3-201ENST00000397213 657 ntBASIC5.84□□□□□ -1.47
MSX2P35548 FDPSP5-201ENST00000399474 1057 ntBASIC5.84□□□□□ -1.47
MSX2P35548 ZNF37CP-201ENST00000406795 241 ntBASIC5.84□□□□□ -1.47
MSX2P35548 RN7SKP91-201ENST00000410852 288 ntBASIC5.84□□□□□ -1.47
MSX2P35548 XKRYP4-201ENST00000414395 483 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AL354868.1-201ENST00000417077 482 ntBASIC5.84□□□□□ -1.47
MSX2P35548 MTCYBP5-201ENST00000423752 1135 ntBASIC5.84□□□□□ -1.47
MSX2P35548 TRBV29OR9-2-201ENST00000427589 333 ntBASIC5.84□□□□□ -1.47
MSX2P35548 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 OR6R1P-201ENST00000431838 940 ntBASIC5.84□□□□□ -1.47
MSX2P35548 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.84□□□□□ -1.47
MSX2P35548 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX2P35548 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX2P35548 XKRYP5-201ENST00000449659 483 ntBASIC5.84□□□□□ -1.47
MSX2P35548 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX2P35548 AC244505.3-201ENST00000454598 187 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms