Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SNRPCP3-201ENST00000474888 476 ntBASIC6.08□□□□□ -1.44
CIITAP33076 CR383656.1-201ENST00000484916 377 ntBASIC6.08□□□□□ -1.44
CIITAP33076 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.08□□□□□ -1.44
CIITAP33076 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.08□□□□□ -1.44
CIITAP33076 RFPL4AP3-201ENST00000515267 345 ntBASIC6.08□□□□□ -1.44
CIITAP33076 SCARNA21.2-201ENST00000516600 166 ntBASIC6.08□□□□□ -1.44
CIITAP33076 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.08□□□□□ -1.44
CIITAP33076 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CIITAP33076 OR4A43P-201ENST00000532938 908 ntBASIC6.08□□□□□ -1.44
CIITAP33076 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CIITAP33076 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC6.08□□□□□ -1.44
CIITAP33076 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.08□□□□□ -1.44
CIITAP33076 AC012414.2-201ENST00000559474 187 ntBASIC6.08□□□□□ -1.44
CIITAP33076 NMNAT1P5-201ENST00000559657 841 ntBASIC6.08□□□□□ -1.44
CIITAP33076 NPM1P45-201ENST00000583151 559 ntBASIC6.08□□□□□ -1.44
CIITAP33076 MIR7853-201ENST00000584820 132 ntBASIC6.08□□□□□ -1.44
CIITAP33076 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.08□□□□□ -1.44
CIITAP33076 AC098483.2-201ENST00000603158 454 ntBASIC6.08□□□□□ -1.44
CIITAP33076 AC090527.3-201ENST00000619041 548 ntBASIC6.08□□□□□ -1.44
CIITAP33076 AP003400.3-201ENST00000624904 346 ntBASIC6.08□□□□□ -1.44
CIITAP33076 AC074101.1-201ENST00000637861 241 ntBASIC6.08□□□□□ -1.44
CIITAP33076 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.08□□□□□ -1.44
CIITAP33076 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CIITAP33076 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
CIITAP33076 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.08□□□□□ -1.44
CIITAP33076 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CIITAP33076 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
CIITAP33076 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.08□□□□□ -1.44
CIITAP33076 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CIITAP33076 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.08□□□□□ -1.44
CIITAP33076 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.08□□□□□ -1.44
CIITAP33076 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.08□□□□□ -1.44
CIITAP33076 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CIITAP33076 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 AL512283.1-201ENST00000606756 1384 ntBASIC6.07□□□□□ -1.44
CIITAP33076 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CIITAP33076 RNU1-146P-201ENST00000364015 165 ntBASIC6.07□□□□□ -1.44
CIITAP33076 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CIITAP33076 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CIITAP33076 AL133482.1-201ENST00000415988 498 ntBASIC6.07□□□□□ -1.44
CIITAP33076 FAM96AP1-201ENST00000430879 482 ntBASIC6.07□□□□□ -1.44
CIITAP33076 AL138787.1-202ENST00000437804 898 ntBASIC6.07□□□□□ -1.44
CIITAP33076 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.07□□□□□ -1.44
CIITAP33076 AL606490.1-201ENST00000452266 765 ntBASIC6.07□□□□□ -1.44
CIITAP33076 RPS4XP1-201ENST00000482189 787 ntBASIC6.07□□□□□ -1.44
CIITAP33076 AC008628.1-201ENST00000508663 265 ntBASIC6.07□□□□□ -1.44
CIITAP33076 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.07□□□□□ -1.44
CIITAP33076 AP003049.1-201ENST00000529418 457 ntBASIC6.07□□□□□ -1.44
CIITAP33076 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.07□□□□□ -1.44
CIITAP33076 MIR1269B-201ENST00000580405 75 ntBASIC6.07□□□□□ -1.44
CIITAP33076 AC126365.2-201ENST00000580630 379 ntBASIC6.07□□□□□ -1.44
CIITAP33076 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC6.07□□□□□ -1.44
CIITAP33076 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 LSM1P2-201ENST00000604911 322 ntBASIC6.07□□□□□ -1.44
CIITAP33076 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CIITAP33076 AC008115.4-201ENST00000619780 775 ntBASIC6.07□□□□□ -1.44
CIITAP33076 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.07□□□□□ -1.44
CIITAP33076 NLRP3P1-201ENST00000622303 1785 ntBASIC6.07□□□□□ -1.44
CIITAP33076 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
CIITAP33076 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CIITAP33076 AL353796.1-201ENST00000561542 3241 ntBASIC6.07□□□□□ -1.44
CIITAP33076 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 AC245100.2-201ENST00000454544 1679 ntBASIC6.07□□□□□ -1.44
CIITAP33076 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CIITAP33076 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.07□□□□□ -1.44
CIITAP33076 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
CIITAP33076 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.06□□□□□ -1.44
CIITAP33076 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.06□□□□□ -1.44
CIITAP33076 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CIITAP33076 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
CIITAP33076 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CIITAP33076 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.06□□□□□ -1.44
CIITAP33076 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CIITAP33076 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.06□□□□□ -1.44
CIITAP33076 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CIITAP33076 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
CIITAP33076 RNA5SP453-201ENST00000362503 119 ntBASIC6.06□□□□□ -1.44
CIITAP33076 RNU6-697P-201ENST00000363348 107 ntBASIC6.06□□□□□ -1.44
CIITAP33076 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CIITAP33076 SNORA67-201ENST00000384423 137 ntBASIC6.06□□□□□ -1.44
CIITAP33076 RNU1-149P-201ENST00000390870 161 ntBASIC6.06□□□□□ -1.44
CIITAP33076 UBE2V1P15-201ENST00000407776 448 ntBASIC6.06□□□□□ -1.44
CIITAP33076 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.06□□□□□ -1.44
CIITAP33076 AL355433.1-201ENST00000422804 300 ntBASIC6.06□□□□□ -1.44
CIITAP33076 AC017019.1-201ENST00000426129 261 ntBASIC6.06□□□□□ -1.44
CIITAP33076 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC6.06□□□□□ -1.44
CIITAP33076 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.06□□□□□ -1.44
CIITAP33076 CNOT7P2-201ENST00000441051 832 ntBASIC6.06□□□□□ -1.44
CIITAP33076 RPS11P7-201ENST00000442125 465 ntBASIC6.06□□□□□ -1.44
CIITAP33076 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.06□□□□□ -1.44
CIITAP33076 AL163193.1-201ENST00000444895 788 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms