Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 AP000432.2-201ENST00000624164 2048 ntBASIC4.9□□□□□ -1.62
LMX1BO60663 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
LMX1BO60663 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 AL592429.1-201ENST00000403909 1473 ntBASIC4.9□□□□□ -1.62
LMX1BO60663 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
LMX1BO60663 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LMX1BO60663 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
LMX1BO60663 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
LMX1BO60663 RNU6-609P-201ENST00000365459 107 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
LMX1BO60663 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 RNU6-40P-201ENST00000384254 107 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AL356057.1-202ENST00000402263 756 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AMZ2P2-201ENST00000406819 1057 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 RNU4-34P-201ENST00000410431 124 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.9□□□□□ -1.63
LMX1BO60663 RPSAP35-201ENST00000413753 818 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.9□□□□□ -1.63
LMX1BO60663 BMS1P17-202ENST00000416720 316 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 AC092447.3-201ENST00000426027 686 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.9□□□□□ -1.63
LMX1BO60663 TMEM183AP1-205ENST00000432739 290 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 Z84478.1-201ENST00000438230 1219 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AC004854.1-201ENST00000440356 349 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.9□□□□□ -1.63
LMX1BO60663 RN7SL799P-201ENST00000475891 298 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC009120.1-201ENST00000493458 473 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AC138866.2-201ENST00000508650 584 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.9□□□□□ -1.63
LMX1BO60663 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 IGHVIII-47-1-201ENST00000518187 331 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 HMGN2P36-201ENST00000529541 409 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.9□□□□□ -1.63
LMX1BO60663 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 MTATP6P24-201ENST00000576835 677 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 ZNF92P2-201ENST00000600543 1059 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 AC009948.4-201ENST00000604692 675 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 NANOGP3-201ENST00000605855 286 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC004808.1-201ENST00000627671 721 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC136428.4-201ENST00000634254 1155 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.9□□□□□ -1.63
LMX1BO60663 AC099654.9-201ENST00000637055 678 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 AP000550.3-201ENST00000637734 379 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
LMX1BO60663 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 NLRP3P1-201ENST00000622303 1785 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 AC007842.1-201ENST00000597336 2039 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 EEF1A1P30-201ENST00000429708 1315 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 GTF2IP4-201ENST00000453092 2054 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 AC110792.3-201ENST00000595906 1614 ntBASIC4.9□□□□□ -1.63
LMX1BO60663 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
LMX1BO60663 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LMX1BO60663 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 DDX6P1-205ENST00000441966 1436 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 AC073429.2-201ENST00000569694 1444 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 ABCC13-202ENST00000463099 3842 ntBASIC4.89□□□□□ -1.63
LMX1BO60663 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LMX1BO60663 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
LMX1BO60663 BCORP1-203ENST00000513194 5093 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms