Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC107905.1-201ENST00000616204 426 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AL031658.2-201ENST00000616850 651 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC118658.2-201ENST00000618697 459 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC018445.2-201ENST00000622987 260 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC005261.6-201ENST00000623072 1387 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 SPTLC1P2-201ENST00000407089 121 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 VN1R31P-201ENST00000417498 730 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AL161722.2-201ENST00000434731 981 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 MYO5BP2-201ENST00000449815 1277 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC092647.2-201ENST00000452998 253 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC026348.1-201ENST00000462549 1053 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 EIF3KP3-201ENST00000514461 639 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 OR10G5P-201ENST00000532733 358 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AP002373.2-201ENST00000541631 1060 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC016180.1-201ENST00000567945 403 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 NPM1P45-201ENST00000583151 559 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 QTRT1P1-201ENST00000604344 1078 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC138473.1-201ENST00000605717 526 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AP005432.2-201ENST00000608162 586 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC099494.2-201ENST00000623371 978 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AP001153.1-201ENST00000641024 338 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LINC01739-205ENST00000641890 573 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LHX3Q9UBR4 AC140134.1-201ENST00000511830 3544 ntBASIC5.26□□□□□ -1.57
LHX3Q9UBR4 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC211486.3-201ENST00000412694 621 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RAB9AP5-201ENST00000437794 597 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RAB9AP2-201ENST00000443911 597 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC090114.3-201ENST00000479267 829 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC147055.1-201ENST00000509261 750 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 RFPL4AP3-201ENST00000515267 345 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC097486.1-201ENST00000515331 210 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC027369.5-201ENST00000533838 755 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC006116.3-201ENST00000592968 361 ntBASIC5.25□□□□□ -1.57
LHX3Q9UBR4 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms