Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 Z95327.1-201ENST00000446082 482 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 RN7SL443P-201ENST00000464331 290 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 NIP7P2-201ENST00000485801 544 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 RPSAP51-201ENST00000497462 645 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC093227.2-201ENST00000589357 285 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC024941.1-201ENST00000612250 334 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC079414.3-201ENST00000612986 1090 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 AL137100.1-201ENST00000556703 1620 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 RN7SKP106-201ENST00000410832 272 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 AC090804.1-201ENST00000448870 490 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 RPS12P31-201ENST00000491419 398 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 AL138960.1-201ENST00000613838 513 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 AC019206.1-201ENST00000621938 425 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 CASC19-243ENST00000641588 1546 ntBASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.54□□□□□ -1.36
SHANK3Q9BYB0 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AL691482.1-201ENST00000453255 87 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC116562.1-201ENST00000485355 781 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 SOX5P1-201ENST00000524155 1127 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 KPNA2P3-201ENST00000584190 848 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC243756.2-201ENST00000618406 463 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 KARSP3-201ENST00000571212 1504 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 RNA5SP28-201ENST00000363841 119 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 NRBF2P3-201ENST00000432731 865 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC005154.2-201ENST00000438110 379 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 EEF1A1P1-201ENST00000447052 739 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 RN7SKP276-201ENST00000516242 268 ntBASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.53□□□□□ -1.36
SHANK3Q9BYB0 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.52□□□□□ -1.36
SHANK3Q9BYB0 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 U3.22-201ENST00000391120 215 ntBASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AF186996.5-201ENST00000418098 904 ntBASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms