Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC136428.4-201ENST00000634254 1155 ntBASIC5.33□□□□□ -1.56
VPS35Q96QK1 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS35Q96QK1 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS35Q96QK1 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS35Q96QK1 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS35Q96QK1 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
VPS35Q96QK1 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS35Q96QK1 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS35Q96QK1 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 MTCO1P22-201ENST00000604619 1360 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 THAP12P8-201ENST00000447914 2115 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RN7SKP145-201ENST00000363291 303 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RNA5SP296-201ENST00000410523 111 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 RPL7P6-201ENST00000480903 738 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 RPL7P39-201ENST00000481157 744 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 RPS24P16-201ENST00000497294 392 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 YWHABP2-201ENST00000540201 713 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AL049779.2-201ENST00000553847 315 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 QTRT1P1-201ENST00000604344 1078 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AP003400.3-201ENST00000624904 346 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS35Q96QK1 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 SAMMSON-213ENST00000641336 1521 ntBASIC5.32□□□□□ -1.56
VPS35Q96QK1 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS35Q96QK1 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 CIR1P2-201ENST00000514821 1342 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 MIR1286-201ENST00000408112 78 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 RN7SKP229-201ENST00000410465 302 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC098592.2-201ENST00000413158 265 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 VN1R31P-201ENST00000417498 730 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 SLC35E1P1-201ENST00000419313 864 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC017019.1-201ENST00000426129 261 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 FAM96AP1-201ENST00000430879 482 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 RPL7L1P9-201ENST00000431298 745 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 RAB9AP5-201ENST00000437794 597 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 RAB9AP2-201ENST00000443911 597 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC079168.1-201ENST00000458741 345 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 RPS26P39-201ENST00000469206 341 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 RN7SL423P-201ENST00000486202 304 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC024558.1-201ENST00000505008 528 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC005252.1-201ENST00000604518 1063 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 AC010632.3-201ENST00000611377 369 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 NF1P10-201ENST00000613227 742 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 OR8G7P-201ENST00000616658 848 ntBASIC5.31□□□□□ -1.56
VPS35Q96QK1 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS35Q96QK1 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS35Q96QK1 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VPS35Q96QK1 OR55B1P-203ENST00000641518 2602 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 150.9 ms