Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 SMG1P7-201ENST00000565246 2704 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 OR10AB1P-202ENST00000641219 1686 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC068870.1-201ENST00000563737 2455 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 HSPA8P18-201ENST00000439846 1928 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 MIR365B-201ENST00000362317 111 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 RNU1-136P-201ENST00000384181 164 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AL355994.1-201ENST00000424379 260 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 RPEP1-201ENST00000504507 658 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC018442.3-201ENST00000523025 183 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AP005403.1-201ENST00000579720 229 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC093388.1-201ENST00000609166 430 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AP002799.1-201ENST00000623552 423 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 AC005005.4-201ENST00000623789 16698 ntBASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HDDC3Q8N4P3 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 KYNUP3-201ENST00000574386 1341 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AL356317.1-201ENST00000396110 1436 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 RBPJP2-201ENST00000618187 1444 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 SNORA16A-201ENST00000384342 137 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC007161.1-204ENST00000423039 460 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AL590399.2-201ENST00000427536 309 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 DSTNP5-201ENST00000427921 523 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 KRT8P51-201ENST00000438938 274 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 CBX1P2-201ENST00000453841 458 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 ATP5LP5-201ENST00000483050 299 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 RNU6-319P-201ENST00000516025 108 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 RN7SKP253-201ENST00000516424 309 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 SCARNA16.4-201ENST00000516956 187 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AP001922.4-201ENST00000526967 290 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC138473.1-201ENST00000605717 526 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC133644.2-201ENST00000608142 540 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 AC008833.1-201ENST00000611633 691 ntBASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HDDC3Q8N4P3 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms