Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 SRSF1P1-201ENST00000424058 520 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 GSTM5P1-201ENST00000434751 660 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC100832.1-201ENST00000471945 383 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 RN7SL174P-201ENST00000475578 289 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 EIF1P7-201ENST00000487533 337 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 RN7SL101P-201ENST00000496350 279 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AL136038.1-201ENST00000497246 351 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 SNORD116-30-201ENST00000516468 85 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 RNU6-943P-201ENST00000516960 98 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 KCTD9P6-201ENST00000522306 950 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC025857.1-201ENST00000525252 377 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AP000859.1-201ENST00000525536 307 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 TRAV11-201ENST00000539512 339 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC090022.1-201ENST00000546569 311 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 OR11H3P-201ENST00000554547 982 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC012146.2-201ENST00000576545 416 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 RBPJP2-201ENST00000618187 1444 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC135068.5-201ENST00000624197 983 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC100757.1-201ENST00000616872 1835 ntBASIC4.76□□□□□ -1.65
SKA3Q8IX90 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC011447.7-201ENST00000624228 1590 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 RNA5SP435-201ENST00000364044 108 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AL133388.1-201ENST00000404509 287 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 CHEK2P5-201ENST00000423877 246 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 NAP1L4P2-201ENST00000425958 899 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 RPL12P17-201ENST00000432393 498 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AL672138.1-201ENST00000450604 1015 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC016724.1-201ENST00000453215 421 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC092754.1-201ENST00000472975 479 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 TRBV8-1-201ENST00000481590 279 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 RN7SL547P-201ENST00000490793 290 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 HMGB1P44-201ENST00000508597 572 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 RNA5SP362-201ENST00000516048 118 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 SCARNA20.4-201ENST00000516969 131 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC008676.3-201ENST00000521237 435 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 ARL6IP1P3-201ENST00000524544 560 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC130364.2-201ENST00000528639 604 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AP004607.2-201ENST00000533949 322 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC010547.7-201ENST00000570323 333 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AL359513.1-201ENST00000614364 557 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms