Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC100871.1-201ENST00000507871 1456 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 GTF2IP5-201ENST00000414608 731 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 CHEK2P3-201ENST00000416118 248 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 IMPA1P1-201ENST00000510718 842 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC006427.1-201ENST00000514359 712 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 MORF4L1P3-201ENST00000525966 950 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 PARP1P2-201ENST00000556806 195 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AC009027.1-201ENST00000604510 479 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 AL138960.1-201ENST00000613838 513 ntBASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC88AQ3V6T2 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
CCDC88AQ3V6T2 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 RSU1P3-201ENST00000412878 835 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 OR7E125P-201ENST00000443450 846 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 RPL7P41-201ENST00000485823 957 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 MRPS21P9-201ENST00000571150 257 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 AL121873.1-201ENST00000616013 524 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 AC006338.2-201ENST00000616864 791 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 KARSP3-201ENST00000571212 1504 ntBASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC88AQ3V6T2 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 OR4K15-201ENST00000305051 1216 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 RPL7P58-201ENST00000402913 758 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL049697.2-201ENST00000403708 294 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC124944.2-201ENST00000429866 1242 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC023271.1-201ENST00000445936 1090 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 RN7SL41P-201ENST00000476144 297 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC083829.1-201ENST00000503756 657 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 HMGN1P9-201ENST00000515212 298 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 DPPA3P2-201ENST00000553589 478 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL020997.2-201ENST00000602607 184 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC092653.1-201ENST00000608509 531 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL356608.1-201ENST00000610034 820 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL117339.4-201ENST00000608335 7063 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC015799.1-201ENST00000622996 3122 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 CYP4F29P-201ENST00000420685 446 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AC021876.1-201ENST00000425959 359 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 AL354714.3-201ENST00000447284 493 ntBASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 154.9 ms