Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
HOXC9P31274 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HOXC9P31274 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 AC079741.1-201ENST00000321498 212 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
HOXC9P31274 RNA5SP191-201ENST00000362585 102 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 RNA5SP505-201ENST00000364748 108 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.78□□□□□ -1.32
HOXC9P31274 RNU6-167P-201ENST00000384292 106 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 Z97832.1-201ENST00000402490 328 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 RNA5SP113-201ENST00000410486 84 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 RNU4-64P-201ENST00000410795 131 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC016397.1-201ENST00000412463 242 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AF186996.5-201ENST00000418098 904 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC007559.1-201ENST00000428736 355 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 MTND4LP12-201ENST00000448237 295 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.78□□□□□ -1.32
HOXC9P31274 RN7SL443P-201ENST00000464331 290 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.78□□□□□ -1.32
HOXC9P31274 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 MORF4L1P3-201ENST00000525966 950 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 OR8Q1P-201ENST00000526467 655 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 AP005901.4-201ENST00000577336 569 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 MIR3667-201ENST00000581025 74 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC209154.1-201ENST00000582156 337 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 AF230666.2-201ENST00000602328 725 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC068790.7-201ENST00000602347 528 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 BNIP3P35-201ENST00000604530 490 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.78□□□□□ -1.32
HOXC9P31274 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.78□□□□□ -1.32
HOXC9P31274 MIR6780A-201ENST00000615089 68 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 MIR6839-201ENST00000620425 113 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
HOXC9P31274 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HOXC9P31274 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.78□□□□□ -1.32
HOXC9P31274 SDAD1P1-202ENST00000524156 2051 ntBASIC6.78□□□□□ -1.32
HOXC9P31274 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
HOXC9P31274 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HOXC9P31274 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.77□□□□□ -1.33
HOXC9P31274 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
HOXC9P31274 HMGB3P7-201ENST00000400214 611 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 SNORA77-201ENST00000408716 125 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 NPM1P40-201ENST00000412758 733 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.77□□□□□ -1.33
HOXC9P31274 RPL12P43-201ENST00000420608 499 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.77□□□□□ -1.33
HOXC9P31274 RPL34P27-201ENST00000428810 349 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 AC099670.2-201ENST00000435130 321 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.77□□□□□ -1.33
HOXC9P31274 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.77□□□□□ -1.33
HOXC9P31274 AC090804.1-201ENST00000448870 490 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 AC073264.2-201ENST00000448886 166 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HOXC9P31274 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.77□□□□□ -1.33
HOXC9P31274 OR5AN2P-201ENST00000534535 896 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 MIR7853-201ENST00000584820 132 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.77□□□□□ -1.33
HOXC9P31274 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.77□□□□□ -1.33
HOXC9P31274 AL391358.1-201ENST00000605342 190 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 AC000095.2-202ENST00000637415 154 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC6.77□□□□□ -1.33
HOXC9P31274 AL137918.1-201ENST00000624542 1922 ntBASIC6.77□□□□□ -1.33
HOXC9P31274 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.77□□□□□ -1.33
HOXC9P31274 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.77□□□□□ -1.33
HOXC9P31274 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.77□□□□□ -1.33
HOXC9P31274 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.77□□□□□ -1.33
HOXC9P31274 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
HOXC9P31274 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.77□□□□□ -1.33
HOXC9P31274 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.76□□□□□ -1.33
HOXC9P31274 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 RN7SKP113-201ENST00000363891 295 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 FABP12P1-201ENST00000401911 322 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 RN7SKP17-201ENST00000411242 351 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 MTND4LP17-201ENST00000414607 293 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.76□□□□□ -1.33
HOXC9P31274 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.76□□□□□ -1.33
HOXC9P31274 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.76□□□□□ -1.33
HOXC9P31274 RBMY2TP-201ENST00000451162 947 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.76□□□□□ -1.33
HOXC9P31274 IMPA1P1-201ENST00000510718 842 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms