Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 MRPS21P7-201ENST00000566937 238 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC068620.3-201ENST00000602749 560 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC067773.1-201ENST00000603284 1094 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC034236.3-201ENST00000605999 461 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AP000864.1-201ENST00000609424 650 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AL050303.3-201ENST00000613704 284 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 MIR7109-201ENST00000613748 65 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC008691.1-209ENST00000642094 814 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 AC132825.1-201ENST00000463573 2247 ntBASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
TCRBV7S3A2A0A539 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AL034549.2-201ENST00000618285 3373 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC010132.2-201ENST00000295493 1043 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 MIR122-201ENST00000385044 85 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 NME1P1-201ENST00000420914 382 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC113412.1-201ENST00000425840 504 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 PTP4A1P3-201ENST00000433661 420 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 RNFT1P2-201ENST00000443064 757 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 RPSAP39-201ENST00000467439 883 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 TRAV31-201ENST00000502780 342 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC121161.1-201ENST00000510606 652 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 NPM1P21-201ENST00000513394 762 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 NANOGNBP2-201ENST00000544753 553 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AF230666.2-201ENST00000602328 725 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC027449.1-201ENST00000608890 407 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AP001033.2-201ENST00000609701 1003 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC244107.2-201ENST00000611773 76 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC008759.3-201ENST00000613300 508 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC004808.1-201ENST00000627671 721 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 FRG1DP-201ENST00000635586 771 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 LINC02019-201ENST00000608605 2060 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AC106872.5-201ENST00000508856 1416 ntBASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TCRBV7S3A2A0A539 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 AL360270.2-201ENST00000562952 5985 ntBASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 GSTA12P-201ENST00000402398 508 ntBASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
TCRBV7S3A2A0A539 RPL10P10-201ENST00000403509 664 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms