Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RN7SKP81-201ENST00000365603 331 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RNU4-2-201ENST00000365668 141 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 OR1L6-202ENST00000373684 1044 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 DBIP1-201ENST00000401435 260 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SNORA11.3-201ENST00000408471 128 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 OR52Y1P-201ENST00000452418 828 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RPS12P31-201ENST00000491419 398 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RPS24P16-201ENST00000497294 392 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC104109.1-201ENST00000498563 436 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC109464.1-201ENST00000511091 819 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RNU6-943P-201ENST00000516960 98 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC027544.3-201ENST00000535082 757 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AL136520.1-202ENST00000555494 763 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC012414.2-201ENST00000559474 187 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AP005403.1-201ENST00000579720 229 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 MIR1273E-201ENST00000581165 102 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC012616.1-201ENST00000600294 197 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC073111.2-201ENST00000605657 1075 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AL158211.2-201ENST00000607282 395 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 AC016542.1-201ENST00000608259 493 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SNORA11.6-201ENST00000619030 128 ntBASIC5.59□□□□□ -1.51
PCDH9Q9HC56 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PCDH9Q9HC56 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
PCDH9Q9HC56 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.59□□□□□ -1.52
PCDH9Q9HC56 MAPK10-328ENST00000641553 4009 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AP005432.1-201ENST00000580891 3485 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AL358178.1-201ENST00000407698 397 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 RN7SKP293-201ENST00000411389 296 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 RPL12P17-201ENST00000432393 498 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC019185.1-201ENST00000442718 389 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 SEPT7P3-201ENST00000455017 621 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 RN7SL717P-201ENST00000478343 297 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC091544.1-201ENST00000484702 348 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC040958.1-201ENST00000561102 201 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC104695.2-201ENST00000605056 775 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC091932.2-201ENST00000623014 291 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC132068.1-201ENST00000623805 459 ntBASIC5.58□□□□□ -1.52
PCDH9Q9HC56 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms