Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 MIR6133-201ENST00000617057 108 ntBASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SHANK3Q9BYB0 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 MIR208A-201ENST00000362287 71 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 SNORA70F-201ENST00000384142 135 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 BX510359.2-201ENST00000417920 305 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 OR2B7P-201ENST00000429302 934 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 EIF2S2P2-201ENST00000447161 982 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 SLC25A18P1-201ENST00000449385 454 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 AC106785.1-201ENST00000565935 262 ntBASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 POMP-202ENST00000460403 1428 ntTSL 3 BASIC6.57□□□□□ -1.36
SHANK3Q9BYB0 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 MIR589-201ENST00000385238 99 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 RPL32P23-201ENST00000397237 405 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC006065.1-201ENST00000422539 802 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC023424.1-201ENST00000496058 459 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 RNA5SP143-201ENST00000516936 115 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC012339.2-201ENST00000523996 453 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 MED28P5-201ENST00000528254 438 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC025750.1-201ENST00000399891 379 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 RNA5SP345-201ENST00000410646 108 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL356390.1-201ENST00000455684 397 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 RN7SL441P-201ENST00000492388 296 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AC138701.1-201ENST00000524329 714 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 SCARNA9-201ENST00000530422 353 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL121834.1-201ENST00000572284 509 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 AL121873.1-201ENST00000616013 524 ntBASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SHANK3Q9BYB0 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 CARF-203ENST00000414439 2099 ntTSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC004158.1-201ENST00000564508 4319 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AL139039.2-201ENST00000407436 479 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC114755.2-201ENST00000413520 361 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 HYALP1-201ENST00000417674 1279 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 AC090018.1-201ENST00000434369 367 ntBASIC6.55□□□□□ -1.36
SHANK3Q9BYB0 NPM1P33-201ENST00000438918 872 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms