Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL391422.1-201ENST00000402155 436 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AL589994.1-201ENST00000404962 340 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 UBE2V2P1-201ENST00000434717 398 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AL391987.1-201ENST00000441025 200 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 AL133372.1-201ENST00000493565 745 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 RFPL4AP5-201ENST00000514977 504 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AL671862.1-201ENST00000515851 349 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 RNU4-18P-201ENST00000516751 149 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 SCARNA16.4-201ENST00000516956 187 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 NMNAT1P5-201ENST00000559657 841 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 AP000769.2-201ENST00000602344 396 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 RNU6-84P-201ENST00000607737 102 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AL451049.1-201ENST00000608672 497 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC096586.2-201ENST00000610260 441 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 MUC2-202ENST00000613187 4845 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.78□□□□□ -1.64
SKA3Q8IX90 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.65
SKA3Q8IX90 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
SKA3Q8IX90 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.78□□□□□ -1.65
SKA3Q8IX90 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC083843.3-201ENST00000623679 2186 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 RNA5SP234-201ENST00000363916 119 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 PPIAP9-201ENST00000403866 498 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 AL512422.1-201ENST00000407033 553 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC105399.1-202ENST00000447303 205 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AP000942.1-201ENST00000463969 747 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AL049874.2-201ENST00000492636 288 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC109464.1-201ENST00000511091 819 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 OR8G3P-201ENST00000533406 921 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 SNORA35B-201ENST00000607417 129 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC000068.2-201ENST00000608816 460 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 uc_338.7-201ENST00000621834 124 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 MIR8080-201ENST00000622224 89 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 AC021766.1-201ENST00000624404 741 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 OR55B1P-203ENST00000641518 2602 ntBASIC4.77□□□□□ -1.65
SKA3Q8IX90 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.77□□□□□ -1.65
SKA3Q8IX90 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SKA3Q8IX90 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SKA3Q8IX90 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.76□□□□□ -1.65
SKA3Q8IX90 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms