Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPS26P38-201ENST00000414476 348 ntBASIC6.35□□□□□ -1.39
RNF4P78317 ATG4AP1-201ENST00000416893 538 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC6.35□□□□□ -1.39
RNF4P78317 AC000089.1-201ENST00000424559 801 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 DUTP4-201ENST00000424782 475 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.35□□□□□ -1.39
RNF4P78317 VN1R54P-201ENST00000435210 1049 ntBASIC6.35□□□□□ -1.39
RNF4P78317 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC6.35□□□□□ -1.39
RNF4P78317 AC091862.1-201ENST00000438016 1100 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
RNF4P78317 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 EPS15P1-201ENST00000448836 336 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC093392.2-201ENST00000450682 337 ntBASIC6.35□□□□□ -1.39
RNF4P78317 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC6.35□□□□□ -1.39
RNF4P78317 RPL23AP35-201ENST00000451906 501 ntBASIC6.35□□□□□ -1.39
RNF4P78317 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 RN7SL216P-201ENST00000471607 298 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC079841.1-201ENST00000481228 950 ntBASIC6.35□□□□□ -1.39
RNF4P78317 RN7SL350P-201ENST00000492591 299 ntBASIC6.35□□□□□ -1.39
RNF4P78317 ARL2BPP4-201ENST00000506854 471 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 RNU6-1225P-201ENST00000516336 65 ntBASIC6.35□□□□□ -1.39
RNF4P78317 CDC42P3-201ENST00000518493 633 ntBASIC6.35□□□□□ -1.39
RNF4P78317 NPM1P6-201ENST00000521088 871 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AP006587.5-201ENST00000532033 739 ntBASIC6.35□□□□□ -1.39
RNF4P78317 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.35□□□□□ -1.39
RNF4P78317 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.35□□□□□ -1.39
RNF4P78317 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 OR11J2P-201ENST00000555298 907 ntBASIC6.35□□□□□ -1.39
RNF4P78317 ZNF519P3-201ENST00000557158 1032 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC084757.1-201ENST00000559987 490 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.35□□□□□ -1.39
RNF4P78317 AL035410.2-201ENST00000604963 864 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC091946.2-201ENST00000606105 291 ntBASIC6.35□□□□□ -1.39
RNF4P78317 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AC005840.5-201ENST00000619166 599 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC048341.3-201ENST00000619323 491 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC016717.3-201ENST00000624730 554 ntBASIC6.35□□□□□ -1.39
RNF4P78317 AC005858.3-201ENST00000624756 589 ntBASIC6.35□□□□□ -1.39
RNF4P78317 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.35□□□□□ -1.39
RNF4P78317 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
RNF4P78317 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
RNF4P78317 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 PDZK1P1-202ENST00000425209 1350 ntBASIC6.34□□□□□ -1.39
RNF4P78317 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 SAMMSON-210ENST00000641260 1308 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 RPL12P13-201ENST00000310055 497 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RN7SKP191-201ENST00000364713 306 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RNU6-621P-201ENST00000364752 109 ntBASIC6.34□□□□□ -1.39
RNF4P78317 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 RNU6-1042P-201ENST00000384204 107 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RNU6-532P-201ENST00000384318 107 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RNU6-1263P-201ENST00000384601 106 ntBASIC6.34□□□□□ -1.39
RNF4P78317 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.34□□□□□ -1.39
RNF4P78317 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.34□□□□□ -1.39
RNF4P78317 IPMKP1-201ENST00000425988 855 ntBASIC6.34□□□□□ -1.39
RNF4P78317 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC6.34□□□□□ -1.39
RNF4P78317 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC6.34□□□□□ -1.39
RNF4P78317 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 IGKV1OR10-1-201ENST00000442306 329 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 COX6CP18-201ENST00000448769 222 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AL606490.1-201ENST00000452266 765 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms