Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.93□□□□□ -1.62
FOXA1P55317 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 Z95327.3-201ENST00000610385 572 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.93□□□□□ -1.62
FOXA1P55317 WBP1LP8-201ENST00000617401 327 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.93□□□□□ -1.62
FOXA1P55317 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.93□□□□□ -1.62
FOXA1P55317 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
FOXA1P55317 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 AC017079.1-201ENST00000333650 415 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 SNORA67-201ENST00000384423 137 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 MIR323B-201ENST00000385269 82 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 NUDT19P3-201ENST00000404698 555 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 RN7SKP293-201ENST00000411389 296 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.92□□□□□ -1.62
FOXA1P55317 AC104843.2-201ENST00000427666 297 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.92□□□□□ -1.62
FOXA1P55317 GTF3AP5-201ENST00000442645 697 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 AC007386.1-201ENST00000455212 582 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 AC023141.9-201ENST00000458734 412 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC4.92□□□□□ -1.62
FOXA1P55317 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC4.92□□□□□ -1.62
FOXA1P55317 AC004477.3-201ENST00000614061 590 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 SAMMSON-209ENST00000641222 1100 ntBASIC4.92□□□□□ -1.62
FOXA1P55317 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
FOXA1P55317 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
FOXA1P55317 AC125336.1-201ENST00000508893 2827 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
FOXA1P55317 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 RNA5SP183-201ENST00000362452 119 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 MIR600-201ENST00000385007 98 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
FOXA1P55317 AC093655.2-201ENST00000425735 631 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.91□□□□□ -1.62
FOXA1P55317 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 RPL7L1P9-201ENST00000431298 745 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 TXNP5-201ENST00000441043 315 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.91□□□□□ -1.62
FOXA1P55317 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.91□□□□□ -1.62
FOXA1P55317 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 RPSAP39-201ENST00000467439 883 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 RN7SL717P-201ENST00000478343 297 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 PGAM1P13-201ENST00000507497 754 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 UGT2A3P7-201ENST00000510485 734 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 GTF2F2P1-201ENST00000511083 675 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 RNA5SP362-201ENST00000516048 118 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.91□□□□□ -1.62
FOXA1P55317 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 AC005868.1-201ENST00000536421 331 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.91□□□□□ -1.62
FOXA1P55317 AL512310.9-201ENST00000553311 948 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 NDUFB4P11-201ENST00000560510 395 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.91□□□□□ -1.62
FOXA1P55317 AC015914.2-201ENST00000618167 288 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 AC090527.3-201ENST00000619041 548 ntBASIC4.91□□□□□ -1.62
FOXA1P55317 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.91□□□□□ -1.62
FOXA1P55317 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
FOXA1P55317 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.91□□□□□ -1.62
FOXA1P55317 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
FOXA1P55317 AC005261.6-201ENST00000623072 1387 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms