Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RN7SKP189-201ENST00000365042 330 ntBASIC6.93□□□□□ -1.3
LIG3P49916 OR1L1-202ENST00000373686 1083 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RNU6-253P-201ENST00000384730 105 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.93□□□□□ -1.3
LIG3P49916 RNU6ATAC25P-201ENST00000408798 117 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RN7SKP142-201ENST00000411236 328 ntBASIC6.93□□□□□ -1.3
LIG3P49916 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 MED14P1-201ENST00000430517 648 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RPL3P11-201ENST00000434028 1146 ntBASIC6.93□□□□□ -1.3
LIG3P49916 FTH1P16-201ENST00000435241 552 ntBASIC6.93□□□□□ -1.3
LIG3P49916 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC6.93□□□□□ -1.3
LIG3P49916 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 HMGB1P16-201ENST00000447155 540 ntBASIC6.93□□□□□ -1.3
LIG3P49916 OR52E3P-201ENST00000452083 936 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 SUMO2P2-201ENST00000456482 255 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC6.93□□□□□ -1.3
LIG3P49916 AC093899.1-201ENST00000457984 376 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RPSAP24-201ENST00000461543 873 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RN7SL372P-201ENST00000461982 298 ntBASIC6.93□□□□□ -1.3
LIG3P49916 CCDC75P1-201ENST00000469247 791 ntBASIC6.93□□□□□ -1.3
LIG3P49916 UOX-201ENST00000471089 899 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 MTCYBP44-201ENST00000514835 823 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.93□□□□□ -1.3
LIG3P49916 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.93□□□□□ -1.3
LIG3P49916 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC6.93□□□□□ -1.3
LIG3P49916 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 PPIAP6-201ENST00000557078 499 ntBASIC6.93□□□□□ -1.3
LIG3P49916 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.93□□□□□ -1.3
LIG3P49916 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC6.93□□□□□ -1.3
LIG3P49916 MIR4666A-201ENST00000580160 79 ntBASIC6.93□□□□□ -1.3
LIG3P49916 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
LIG3P49916 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC6.93□□□□□ -1.3
LIG3P49916 BNIP3P4-201ENST00000604946 565 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AP002360.4-201ENST00000606980 481 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AL355073.2-201ENST00000612106 557 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.93□□□□□ -1.3
LIG3P49916 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.93□□□□□ -1.3
LIG3P49916 U6atac.1-201ENST00000616025 117 ntBASIC6.93□□□□□ -1.3
LIG3P49916 MRPL57P3-201ENST00000619218 176 ntBASIC6.93□□□□□ -1.3
LIG3P49916 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
LIG3P49916 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.92□□□□□ -1.3
LIG3P49916 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 TMSB4XP2-201ENST00000335179 210 ntBASIC6.92□□□□□ -1.3
LIG3P49916 STAG3L4-201ENST00000352103 530 ntBASIC6.92□□□□□ -1.3
LIG3P49916 RNA5SP152-201ENST00000365184 110 ntBASIC6.92□□□□□ -1.3
LIG3P49916 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 RNA5SP80-201ENST00000410475 111 ntBASIC6.92□□□□□ -1.3
LIG3P49916 FCF1P9-201ENST00000412546 282 ntBASIC6.92□□□□□ -1.3
LIG3P49916 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 OR6K4P-201ENST00000423179 955 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
LIG3P49916 MTCO1P52-201ENST00000433928 531 ntBASIC6.92□□□□□ -1.3
LIG3P49916 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC6.92□□□□□ -1.3
LIG3P49916 AL357520.1-201ENST00000441557 453 ntBASIC6.92□□□□□ -1.3
LIG3P49916 CDC27P1-201ENST00000445384 715 ntBASIC6.92□□□□□ -1.3
LIG3P49916 FAR2P1-206ENST00000449736 709 ntBASIC6.92□□□□□ -1.3
LIG3P49916 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.92□□□□□ -1.3
LIG3P49916 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
LIG3P49916 RN7SL390P-201ENST00000470634 284 ntBASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms