Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXA9P31269 RNA5SP87-201ENST00000384155 118 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.52□□□□□ -1.53
HOXA9P31269 AL354766.1-201ENST00000423396 542 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 EI24P4-201ENST00000423683 1078 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 AC104837.2-201ENST00000427236 424 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 AL049745.1-201ENST00000433953 286 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 AC073465.2-201ENST00000440938 498 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 RPS3AP53-201ENST00000454716 778 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 AC090142.2-201ENST00000483263 416 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 AC007686.1-201ENST00000488511 463 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA9P31269 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 CR383656.6-201ENST00000550518 394 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA9P31269 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXA9P31269 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXA9P31269 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA9P31269 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
HOXA9P31269 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 AC006206.1-201ENST00000544842 3387 ntBASIC5.52□□□□□ -1.53
HOXA9P31269 NXF4-202ENST00000416098 1465 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA9P31269 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
HOXA9P31269 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 AL158827.1-201ENST00000416300 391 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXA9P31269 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXA9P31269 Z80107.2-201ENST00000445127 392 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 AC108751.3-201ENST00000461814 1020 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA9P31269 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXA9P31269 SCARNA20.4-201ENST00000516969 131 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXA9P31269 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
HOXA9P31269 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXA9P31269 AC009027.1-201ENST00000604510 479 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 AP005131.7-201ENST00000610087 611 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 AC073575.2-201ENST00000614212 627 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA9P31269 AL359715.3-201ENST00000569267 2123 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 AL353796.1-201ENST00000561542 3241 ntBASIC5.51□□□□□ -1.53
HOXA9P31269 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.51□□□□□ -1.53
HOXA9P31269 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA9P31269 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
HOXA9P31269 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXA9P31269 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXA9P31269 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXA9P31269 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
HOXA9P31269 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXA9P31269 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXA9P31269 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXA9P31269 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.5□□□□□ -1.53
HOXA9P31269 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXA9P31269 AC009506.2-201ENST00000420635 840 ntBASIC5.5□□□□□ -1.53
HOXA9P31269 AL360081.1-201ENST00000428299 555 ntBASIC5.5□□□□□ -1.53
HOXA9P31269 USP9YP9-201ENST00000429406 715 ntBASIC5.5□□□□□ -1.53
HOXA9P31269 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXA9P31269 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms