Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A3P12111 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
COL6A3P12111 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.11□□□□□ -1.59
COL6A3P12111 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 OR51B3P-201ENST00000412287 913 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 IGHV5-78-201ENST00000450948 295 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A3P12111 AL132838.2-201ENST00000492041 314 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A3P12111 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A3P12111 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A3P12111 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A3P12111 AC140479.6-201ENST00000633535 357 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
COL6A3P12111 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 ECM1P2-201ENST00000503354 1577 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 GPR155-203ENST00000392552 6730 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A3P12111 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A3P12111 AL591363.1-201ENST00000450091 483 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 UBE2DNL-203ENST00000474922 222 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 AC010476.1-201ENST00000519111 851 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 AGGF1P6-201ENST00000569213 976 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 AL121772.2-201ENST00000614331 297 ntBASIC5.11□□□□□ -1.59
COL6A3P12111 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A3P12111 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A3P12111 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
COL6A3P12111 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A3P12111 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 UQCRBP1-201ENST00000421129 336 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A3P12111 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A3P12111 RPL12P39-201ENST00000455456 496 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A3P12111 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL6A3P12111 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 OR4F13P-202ENST00000560066 2054 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 MARK2P15-201ENST00000432204 2186 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 LRRC37BP1-203ENST00000417404 4742 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 AL603766.1-201ENST00000407763 664 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A3P12111 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A3P12111 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.1□□□□□ -1.59
COL6A3P12111 AC122688.1-201ENST00000541494 223 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 AC019176.2-201ENST00000611579 315 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL6A3P12111 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.1□□□□□ -1.59
COL6A3P12111 NSD2-212ENST00000503128 8568 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 MIR640-201ENST00000385086 96 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A3P12111 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A3P12111 AC019322.1-201ENST00000571869 389 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 EIF1P5-201ENST00000585002 234 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 SNORA51-201ENST00000606420 132 ntBASIC5.1□□□□□ -1.59
COL6A3P12111 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A3P12111 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A3P12111 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A3P12111 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
COL6A3P12111 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A3P12111 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.09□□□□□ -1.59
COL6A3P12111 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
COL6A3P12111 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A3P12111 TRERF1-204ENST00000372922 7286 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 RPL23AP26-201ENST00000412728 464 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AL356095.1-201ENST00000417217 199 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 YY1P1-201ENST00000427625 668 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AC097523.2-201ENST00000435551 652 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 TMX2P1-201ENST00000436507 708 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms