Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 HSPD1P7-201ENST00000447985 1686 ntBASIC8.94□□□□□ -0.98
CUX2O14529 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 AC022164.1-201ENST00000568767 2673 ntBASIC8.94□□□□□ -0.98
CUX2O14529 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 AC093829.1-201ENST00000506662 1618 ntBASIC8.94□□□□□ -0.98
CUX2O14529 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
CUX2O14529 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 SLC9B1P4-201ENST00000421957 1288 ntBASIC8.94□□□□□ -0.98
CUX2O14529 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 Z95152.1-201ENST00000453556 656 ntBASIC8.94□□□□□ -0.98
CUX2O14529 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC8.94□□□□□ -0.98
CUX2O14529 AL356390.1-201ENST00000455684 397 ntBASIC8.94□□□□□ -0.98
CUX2O14529 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 snoU109.5-201ENST00000516231 132 ntBASIC8.94□□□□□ -0.98
CUX2O14529 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC8.94□□□□□ -0.98
CUX2O14529 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC8.94□□□□□ -0.98
CUX2O14529 RPL12P25-202ENST00000598100 674 ntBASIC8.94□□□□□ -0.98
CUX2O14529 AC093765.1-201ENST00000603758 881 ntBASIC8.94□□□□□ -0.98
CUX2O14529 AL133481.2-203ENST00000607558 139 ntBASIC8.94□□□□□ -0.98
CUX2O14529 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
CUX2O14529 MIR6075-201ENST00000620782 95 ntBASIC8.94□□□□□ -0.98
CUX2O14529 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC8.94□□□□□ -0.98
CUX2O14529 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX2O14529 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
CUX2O14529 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC8.93□□□□□ -0.98
CUX2O14529 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC8.93□□□□□ -0.98
CUX2O14529 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
CUX2O14529 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
CUX2O14529 RN7SKP280-201ENST00000364196 304 ntBASIC8.93□□□□□ -0.98
CUX2O14529 RNU1-136P-201ENST00000384181 164 ntBASIC8.93□□□□□ -0.98
CUX2O14529 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC8.93□□□□□ -0.98
CUX2O14529 AL590762.2-201ENST00000395798 571 ntBASIC8.93□□□□□ -0.98
CUX2O14529 CASKP1-201ENST00000412870 582 ntBASIC8.93□□□□□ -0.98
CUX2O14529 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC8.93□□□□□ -0.98
CUX2O14529 RAD23BP1-201ENST00000421404 1227 ntBASIC8.93□□□□□ -0.98
CUX2O14529 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX2O14529 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX2O14529 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX2O14529 RN7SKP248-201ENST00000516278 305 ntBASIC8.93□□□□□ -0.98
CUX2O14529 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX2O14529 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC8.93□□□□□ -0.98
CUX2O14529 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC8.93□□□□□ -0.98
CUX2O14529 AC004777.1-201ENST00000624317 287 ntBASIC8.93□□□□□ -0.98
CUX2O14529 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX2O14529 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
CUX2O14529 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC8.93□□□□□ -0.98
CUX2O14529 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
CUX2O14529 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
CUX2O14529 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
CUX2O14529 CYCSP10-201ENST00000417973 294 ntBASIC8.92□□□□□ -0.98
CUX2O14529 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 AC012339.2-201ENST00000523996 453 ntBASIC8.92□□□□□ -0.98
CUX2O14529 AL161756.2-201ENST00000604597 246 ntBASIC8.92□□□□□ -0.98
CUX2O14529 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC8.92□□□□□ -0.98
CUX2O14529 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC8.92□□□□□ -0.98
CUX2O14529 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
CUX2O14529 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 AC010928.1-201ENST00000592477 1447 ntBASIC8.92□□□□□ -0.98
CUX2O14529 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX2O14529 AC004158.1-201ENST00000564508 4319 ntBASIC8.92□□□□□ -0.98
CUX2O14529 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC8.92□□□□□ -0.98
CUX2O14529 MFSD8-242ENST00000641690 4199 ntBASIC8.91□□□□□ -0.98
CUX2O14529 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX2O14529 AL049697.2-201ENST00000403708 294 ntBASIC8.91□□□□□ -0.98
CUX2O14529 MTND4LP17-201ENST00000414607 293 ntBASIC8.91□□□□□ -0.98
CUX2O14529 RNGTTP1-201ENST00000420965 728 ntBASIC8.91□□□□□ -0.98
CUX2O14529 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC8.91□□□□□ -0.98
CUX2O14529 KRT8P51-201ENST00000438938 274 ntBASIC8.91□□□□□ -0.98
CUX2O14529 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX2O14529 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX2O14529 PRSS3P4-201ENST00000453323 162 ntBASIC8.91□□□□□ -0.98
CUX2O14529 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
CUX2O14529 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX2O14529 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX2O14529 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC8.91□□□□□ -0.98
CUX2O14529 RN7SL356P-201ENST00000582228 248 ntBASIC8.91□□□□□ -0.98
CUX2O14529 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC8.91□□□□□ -0.98
CUX2O14529 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC8.91□□□□□ -0.98
CUX2O14529 AC024220.1-201ENST00000603675 484 ntBASIC8.91□□□□□ -0.98
CUX2O14529 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC8.91□□□□□ -0.98
CUX2O14529 MTCO1P1-201ENST00000624263 1081 ntBASIC8.91□□□□□ -0.98
CUX2O14529 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX2O14529 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX2O14529 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX2O14529 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms