Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AL121886.1-201ENST00000358609 435 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 MIR7-1-201ENST00000384871 110 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 MIR765-201ENST00000390226 114 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 RNA5SP339-201ENST00000390987 122 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC007068.1-201ENST00000396690 844 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC096921.1-201ENST00000411661 375 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AJ239321.1-201ENST00000424255 564 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 OR10T1P-201ENST00000424327 947 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC005033.1-201ENST00000428904 813 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 MTCO1P57-201ENST00000432182 261 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 NDUFA5P1-201ENST00000433858 341 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 RPL12P3-201ENST00000440080 396 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 RPL7AP6-201ENST00000477943 801 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 ATG10-AS1-201ENST00000504846 648 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC138409.2-202ENST00000507274 458 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 ST13P12-201ENST00000508958 1094 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC137627.1-201ENST00000545761 289 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AL136295.6-201ENST00000610486 658 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC090510.2-201ENST00000617465 629 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 AC068870.2-201ENST00000620635 389 ntBASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC3Q9BQI4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC3Q9BQI4 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.56
CCDC3Q9BQI4 AC133552.1-201ENST00000569988 4007 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC022417.1-201ENST00000624768 1303 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 MIR133B-201ENST00000362210 119 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 SNORA67-201ENST00000384423 137 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 RN7SKP279-201ENST00000411383 298 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 CBX1P3-201ENST00000413296 527 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AL512504.1-201ENST00000415494 778 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC108075.1-201ENST00000424692 529 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC021876.1-201ENST00000425959 359 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 DSTNP5-201ENST00000427921 523 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 NANOGP9-201ENST00000439890 892 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AL645937.3-201ENST00000453647 936 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 snoU13.29-201ENST00000459370 104 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC025181.1-201ENST00000477507 416 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC016687.1-201ENST00000482574 353 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 MIR3691-201ENST00000578066 90 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 RBM22P1-201ENST00000578589 1214 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 MIR4420-201ENST00000583944 77 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AL354696.1-201ENST00000614652 497 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 AC009032.1-201ENST00000617574 431 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 150.1 ms