Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 NEAT1-202ENST00000501122 22743 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 OR9K1P-201ENST00000326513 941 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 RN7SKP124-201ENST00000364730 341 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 SNORA16A-201ENST00000384342 137 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 CBX1P3-201ENST00000413296 527 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 NPM1P22-201ENST00000427761 952 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 NDUFB4P8-201ENST00000435351 367 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 RANP1-206ENST00000455094 651 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 RNA5SP103-201ENST00000459503 118 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 RPSAP39-201ENST00000467439 883 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC091544.1-201ENST00000484702 348 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 RN7SL466P-201ENST00000497546 295 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC113398.2-201ENST00000507630 558 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC021106.1-201ENST00000509020 1058 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 IGKV3D-34-201ENST00000522638 302 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC079064.1-201ENST00000528365 362 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 AL589674.2-201ENST00000604304 337 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SKA3Q8IX90 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SKA3Q8IX90 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 RNA5SP319-201ENST00000362768 119 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 RNA5SP242-201ENST00000364171 118 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 SNORD56.6-201ENST00000384569 71 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 RNA5SP487-201ENST00000410186 122 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC211486.3-201ENST00000412694 621 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AL513325.1-201ENST00000417716 1034 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC009784.1-201ENST00000426484 460 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AL359265.1-201ENST00000440296 795 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 ABCC13-202ENST00000463099 3842 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 RN7SL51P-201ENST00000468230 285 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 RPL35AP19-201ENST00000469425 329 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC090638.1-201ENST00000498296 909 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC091912.1-201ENST00000511351 248 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 MTND6P2-201ENST00000512226 524 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC078878.1-201ENST00000539832 958 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC127024.5-201ENST00000580085 462 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AL713998.2-201ENST00000604538 1198 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC010245.2-201ENST00000606908 1167 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC004477.3-201ENST00000614061 590 ntBASIC4.79□□□□□ -1.64
SKA3Q8IX90 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SKA3Q8IX90 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.79□□□□□ -1.64
SKA3Q8IX90 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SKA3Q8IX90 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SKA3Q8IX90 MIR323A-201ENST00000362199 86 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms