Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC009237.13-201ENST00000603193 276 ntBASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AL132640.2-201ENST00000559968 1698 ntBASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 CR1-203ENST00000367051 7469 ntTSL 5 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC003973.3-201ENST00000624863 2822 ntBASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RN7SKP100-201ENST00000411258 284 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RPS27AP6-201ENST00000427962 448 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC073465.2-201ENST00000440938 498 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 GTF2IP11-201ENST00000526931 420 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AL359955.1-201ENST00000455242 3275 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 MSL3P1-202ENST00000440028 1468 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RN7SKP145-201ENST00000363291 303 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 U3.10-201ENST00000364459 214 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RNA5SP90-201ENST00000364801 99 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RNU1-74P-201ENST00000384108 171 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 RPL36AP15-201ENST00000444514 266 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC103987.1-201ENST00000473394 348 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 AC138701.1-201ENST00000524329 714 ntBASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.39□□□□□ -1.39
CCDC88AQ3V6T2 MAPK10-270ENST00000641102 3538 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 CASC19-260ENST00000641828 2001 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 MIR600-201ENST00000385007 98 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 RPS27AP7-201ENST00000422792 455 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC025674.1-201ENST00000507074 324 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 SEPT10P1-201ENST00000517342 1162 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC136624.4-201ENST00000573044 370 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC011944.2-201ENST00000624440 683 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC005618.4-201ENST00000625053 554 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 AC104964.3-201ENST00000606115 2860 ntBASIC6.38□□□□□ -1.39
CCDC88AQ3V6T2 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 HSPD1P12-201ENST00000429127 1069 ntBASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 MIR4675-201ENST00000577898 77 ntBASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AC016717.3-201ENST00000624730 554 ntBASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC88AQ3V6T2 AC093297.3-201ENST00000607056 2517 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms