Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC010287.1-201ENST00000566916 357 ntBASIC6.95□□□□□ -1.3
LIG3P49916 MIR4312-201ENST00000579909 76 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AC087575.1-201ENST00000585087 229 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AP005137.2-201ENST00000609238 400 ntBASIC6.95□□□□□ -1.3
LIG3P49916 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.95□□□□□ -1.3
LIG3P49916 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC129502.1-201ENST00000623261 1654 ntBASIC6.95□□□□□ -1.3
LIG3P49916 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
LIG3P49916 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 AC010168.2-201ENST00000562691 5428 ntBASIC6.95□□□□□ -1.3
LIG3P49916 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 MTCO1P6-201ENST00000481192 1384 ntBASIC6.95□□□□□ -1.3
LIG3P49916 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.94□□□□□ -1.3
LIG3P49916 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 AL731556.1-201ENST00000394628 3711 ntBASIC6.94□□□□□ -1.3
LIG3P49916 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIG3P49916 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIG3P49916 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIG3P49916 OR2M1P-201ENST00000318104 951 ntBASIC6.94□□□□□ -1.3
LIG3P49916 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIG3P49916 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.94□□□□□ -1.3
LIG3P49916 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIG3P49916 CEACAMP8-201ENST00000413902 580 ntBASIC6.94□□□□□ -1.3
LIG3P49916 TCEA1P4-201ENST00000415066 844 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 USP9YP22-201ENST00000438971 294 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AL031667.1-201ENST00000440222 725 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.94□□□□□ -1.3
LIG3P49916 RPS26P11-201ENST00000463445 348 ntBASIC6.94□□□□□ -1.3
LIG3P49916 RPS26P6-201ENST00000475156 348 ntBASIC6.94□□□□□ -1.3
LIG3P49916 RN7SL379P-201ENST00000479912 293 ntBASIC6.94□□□□□ -1.3
LIG3P49916 RPL7P40-201ENST00000481703 745 ntBASIC6.94□□□□□ -1.3
LIG3P49916 RN7SL655P-201ENST00000486087 298 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC073610.1-201ENST00000489971 396 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIG3P49916 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.94□□□□□ -1.3
LIG3P49916 AC079395.1-201ENST00000510981 262 ntBASIC6.94□□□□□ -1.3
LIG3P49916 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 AC106038.2-201ENST00000520706 568 ntBASIC6.94□□□□□ -1.3
LIG3P49916 MTCYBP41-201ENST00000528913 1123 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AP001317.1-201ENST00000531194 960 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC6.94□□□□□ -1.3
LIG3P49916 AC092375.1-201ENST00000550410 637 ntBASIC6.94□□□□□ -1.3
LIG3P49916 PCNPP1-201ENST00000552501 511 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.94□□□□□ -1.3
LIG3P49916 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 EIF1P4-201ENST00000572664 335 ntBASIC6.94□□□□□ -1.3
LIG3P49916 MIR378C-201ENST00000578683 81 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC6.94□□□□□ -1.3
LIG3P49916 MIR4420-201ENST00000583944 77 ntBASIC6.94□□□□□ -1.3
LIG3P49916 U73023.1-201ENST00000603134 700 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC009237.12-201ENST00000604755 742 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.94□□□□□ -1.3
LIG3P49916 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.94□□□□□ -1.3
LIG3P49916 AC068944.2-201ENST00000610373 403 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC008083.4-201ENST00000615076 444 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC106782.7-201ENST00000624024 418 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC133555.5-201ENST00000624430 418 ntBASIC6.94□□□□□ -1.3
LIG3P49916 AC127502.3-201ENST00000636170 1206 ntBASIC6.94□□□□□ -1.3
LIG3P49916 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.94□□□□□ -1.3
LIG3P49916 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.94□□□□□ -1.3
LIG3P49916 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.94□□□□□ -1.3
LIG3P49916 AC011477.1-204ENST00000623416 1325 ntBASIC6.94□□□□□ -1.3
LIG3P49916 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIG3P49916 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
LIG3P49916 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
LIG3P49916 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
LIG3P49916 OR10D1P-201ENST00000355343 936 ntBASIC6.93□□□□□ -1.3
LIG3P49916 AL672167.1-206ENST00000356293 943 ntBASIC6.93□□□□□ -1.3
LIG3P49916 RN7SKP118-201ENST00000364331 330 ntBASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms