Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
RFX1P22670 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
RFX1P22670 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC7.7□□□□□ -1.18
RFX1P22670 ALB-214ENST00000509063 1911 ntTSL 5 BASIC7.7□□□□□ -1.18
RFX1P22670 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
RFX1P22670 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC7.69□□□□□ -1.18
RFX1P22670 AL355488.2-201ENST00000609909 2850 ntBASIC7.69□□□□□ -1.18
RFX1P22670 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 AL391261.1-201ENST00000555712 1479 ntBASIC7.69□□□□□ -1.18
RFX1P22670 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 RNF6P1-201ENST00000444889 1784 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC009220.2-201ENST00000489759 1751 ntBASIC7.69□□□□□ -1.18
RFX1P22670 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.69□□□□□ -1.18
RFX1P22670 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 AL121949.2-201ENST00000403446 1548 ntBASIC7.69□□□□□ -1.18
RFX1P22670 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 RPL21P132-201ENST00000331267 462 ntBASIC7.69□□□□□ -1.18
RFX1P22670 RNU6-374P-201ENST00000364146 108 ntBASIC7.69□□□□□ -1.18
RFX1P22670 RNU6-660P-201ENST00000364566 109 ntBASIC7.69□□□□□ -1.18
RFX1P22670 RPS3AP5-201ENST00000389400 821 ntBASIC7.69□□□□□ -1.18
RFX1P22670 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
RFX1P22670 AL033519.1-201ENST00000407266 307 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AL512649.1-201ENST00000428997 581 ntBASIC7.69□□□□□ -1.18
RFX1P22670 RPS24P8-201ENST00000431490 402 ntBASIC7.69□□□□□ -1.18
RFX1P22670 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC7.69□□□□□ -1.18
RFX1P22670 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC7.69□□□□□ -1.18
RFX1P22670 RPS27AP15-201ENST00000447672 466 ntBASIC7.69□□□□□ -1.18
RFX1P22670 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.69□□□□□ -1.18
RFX1P22670 SNORA81.1-201ENST00000458922 177 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC7.69□□□□□ -1.18
RFX1P22670 RN7SL836P-201ENST00000476140 296 ntBASIC7.69□□□□□ -1.18
RFX1P22670 RN7SL502P-201ENST00000481857 290 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC7.69□□□□□ -1.18
RFX1P22670 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC7.69□□□□□ -1.18
RFX1P22670 AC109464.2-201ENST00000510242 943 ntBASIC7.69□□□□□ -1.18
RFX1P22670 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 IGHVIII-26-1-201ENST00000520387 250 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC107952.1-201ENST00000524200 376 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC7.69□□□□□ -1.18
RFX1P22670 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
RFX1P22670 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 AC069240.2-201ENST00000550242 609 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC074029.1-201ENST00000552531 1044 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC7.69□□□□□ -1.18
RFX1P22670 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC7.69□□□□□ -1.18
RFX1P22670 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 AL390816.3-201ENST00000604527 1066 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC069234.5-201ENST00000611056 416 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC016769.4-201ENST00000616893 535 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AL357080.1-201ENST00000617394 239 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC138932.5-201ENST00000617759 563 ntBASIC7.69□□□□□ -1.18
RFX1P22670 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC7.69□□□□□ -1.18
RFX1P22670 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC7.69□□□□□ -1.18
RFX1P22670 AL079343.1-201ENST00000572358 1771 ntBASIC7.69□□□□□ -1.18
RFX1P22670 AC093225.1-201ENST00000506867 1408 ntBASIC7.69□□□□□ -1.18
RFX1P22670 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
RFX1P22670 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 MTCO1P23-201ENST00000415223 1526 ntBASIC7.68□□□□□ -1.18
RFX1P22670 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC7.68□□□□□ -1.18
RFX1P22670 CR383658.2-201ENST00000547576 1525 ntBASIC7.68□□□□□ -1.18
RFX1P22670 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC7.68□□□□□ -1.18
RFX1P22670 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC7.68□□□□□ -1.18
RFX1P22670 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC7.68□□□□□ -1.18
RFX1P22670 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.68□□□□□ -1.18
RFX1P22670 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
RFX1P22670 FAM32BP-201ENST00000344033 333 ntBASIC7.68□□□□□ -1.18
RFX1P22670 RNA5SP88-201ENST00000365560 109 ntBASIC7.68□□□□□ -1.18
RFX1P22670 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
RFX1P22670 MIR187-201ENST00000385062 109 ntBASIC7.68□□□□□ -1.18
RFX1P22670 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC7.68□□□□□ -1.18
RFX1P22670 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC7.68□□□□□ -1.18
RFX1P22670 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.68□□□□□ -1.18
RFX1P22670 AC091390.2-201ENST00000432573 374 ntBASIC7.68□□□□□ -1.18
RFX1P22670 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC7.68□□□□□ -1.18
RFX1P22670 AL596276.1-201ENST00000434465 418 ntBASIC7.68□□□□□ -1.18
RFX1P22670 MTND1P28-201ENST00000435623 950 ntBASIC7.68□□□□□ -1.18
RFX1P22670 AL161626.1-201ENST00000441480 490 ntBASIC7.68□□□□□ -1.18
RFX1P22670 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC7.68□□□□□ -1.18
RFX1P22670 EPS15P1-201ENST00000448836 336 ntBASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms