Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC010245.2-201ENST00000606908 1167 ntBASIC5.43□□□□□ -1.54
MSH3P20585 MIR8080-201ENST00000622224 89 ntBASIC5.43□□□□□ -1.54
MSH3P20585 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.43□□□□□ -1.54
MSH3P20585 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.43□□□□□ -1.54
MSH3P20585 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.43□□□□□ -1.54
MSH3P20585 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.43□□□□□ -1.54
MSH3P20585 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.43□□□□□ -1.54
MSH3P20585 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 AL929601.4-201ENST00000613011 1341 ntBASIC5.43□□□□□ -1.54
MSH3P20585 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.43□□□□□ -1.54
MSH3P20585 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSH3P20585 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
MSH3P20585 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSH3P20585 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 AL607077.1-201ENST00000401718 499 ntBASIC5.42□□□□□ -1.54
MSH3P20585 AL391422.1-201ENST00000402155 436 ntBASIC5.42□□□□□ -1.54
MSH3P20585 RN7SKP206-201ENST00000410823 293 ntBASIC5.42□□□□□ -1.54
MSH3P20585 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.42□□□□□ -1.54
MSH3P20585 AC073465.2-201ENST00000440938 498 ntBASIC5.42□□□□□ -1.54
MSH3P20585 PPIAP20-201ENST00000449839 135 ntBASIC5.42□□□□□ -1.54
MSH3P20585 OR6C72P-201ENST00000451403 892 ntBASIC5.42□□□□□ -1.54
MSH3P20585 CBX1P2-201ENST00000453841 458 ntBASIC5.42□□□□□ -1.54
MSH3P20585 RANP1-206ENST00000455094 651 ntBASIC5.42□□□□□ -1.54
MSH3P20585 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.42□□□□□ -1.54
MSH3P20585 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.42□□□□□ -1.54
MSH3P20585 RPL35AP19-201ENST00000469425 329 ntBASIC5.42□□□□□ -1.54
MSH3P20585 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.42□□□□□ -1.54
MSH3P20585 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.42□□□□□ -1.54
MSH3P20585 RNA5SP362-201ENST00000516048 118 ntBASIC5.42□□□□□ -1.54
MSH3P20585 RNU6-943P-201ENST00000516960 98 ntBASIC5.42□□□□□ -1.54
MSH3P20585 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.42□□□□□ -1.54
MSH3P20585 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.42□□□□□ -1.54
MSH3P20585 AC079064.1-201ENST00000528365 362 ntBASIC5.42□□□□□ -1.54
MSH3P20585 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSH3P20585 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.42□□□□□ -1.54
MSH3P20585 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSH3P20585 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
MSH3P20585 AC010503.3-201ENST00000594355 540 ntBASIC5.42□□□□□ -1.54
MSH3P20585 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.42□□□□□ -1.54
MSH3P20585 uc_338.7-201ENST00000621834 124 ntBASIC5.42□□□□□ -1.54
MSH3P20585 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.42□□□□□ -1.54
MSH3P20585 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.42□□□□□ -1.54
MSH3P20585 THAP12P8-201ENST00000447914 2115 ntBASIC5.42□□□□□ -1.54
MSH3P20585 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
MSH3P20585 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.42□□□□□ -1.54
MSH3P20585 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 MAPK10-328ENST00000641553 4009 ntBASIC5.42□□□□□ -1.54
MSH3P20585 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.42□□□□□ -1.54
MSH3P20585 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSH3P20585 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.41□□□□□ -1.54
MSH3P20585 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.41□□□□□ -1.54
MSH3P20585 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
MSH3P20585 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
MSH3P20585 RNA5SP187-201ENST00000384400 119 ntBASIC5.41□□□□□ -1.54
MSH3P20585 SETP10-201ENST00000424368 814 ntBASIC5.41□□□□□ -1.54
MSH3P20585 NAP1L4P2-201ENST00000425958 899 ntBASIC5.41□□□□□ -1.54
MSH3P20585 AC105399.1-202ENST00000447303 205 ntBASIC5.41□□□□□ -1.54
MSH3P20585 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
MSH3P20585 EIF1P7-201ENST00000487533 337 ntBASIC5.41□□□□□ -1.54
MSH3P20585 AC138409.2-202ENST00000507274 458 ntBASIC5.41□□□□□ -1.54
MSH3P20585 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.41□□□□□ -1.54
MSH3P20585 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.41□□□□□ -1.54
MSH3P20585 AC109464.1-201ENST00000511091 819 ntBASIC5.41□□□□□ -1.54
MSH3P20585 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.41□□□□□ -1.54
MSH3P20585 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 AC027026.1-201ENST00000532323 742 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms