Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 AC010653.2-201ENST00000623505 997 ntBASIC19.75■□□□□ 0.75
TNFRSF4P43489 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TNFRSF4P43489 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TNFRSF4P43489 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.74■□□□□ 0.75
TNFRSF4P43489 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.74■□□□□ 0.75
TNFRSF4P43489 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
TNFRSF4P43489 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
TNFRSF4P43489 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TNFRSF4P43489 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
TNFRSF4P43489 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 TSPY17P-201ENST00000450329 467 ntBASIC19.73■□□□□ 0.75
TNFRSF4P43489 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
TNFRSF4P43489 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TNFRSF4P43489 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 AK4P3-201ENST00000418260 669 ntBASIC19.72■□□□□ 0.75
TNFRSF4P43489 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 WWOX-216ENST00000569818 525 ntBASIC19.72■□□□□ 0.75
TNFRSF4P43489 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TNFRSF4P43489 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.72■□□□□ 0.75
TNFRSF4P43489 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 AC007663.1-201ENST00000438948 1240 ntBASIC19.71■□□□□ 0.75
TNFRSF4P43489 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 LINC01238-205ENST00000567549 1107 ntBASIC19.71■□□□□ 0.75
TNFRSF4P43489 AC087388.1-201ENST00000571370 1112 ntBASIC19.71■□□□□ 0.75
TNFRSF4P43489 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 AL023803.3-201ENST00000615559 522 ntBASIC19.71■□□□□ 0.75
TNFRSF4P43489 AL138966.2-201ENST00000621997 464 ntBASIC19.71■□□□□ 0.75
TNFRSF4P43489 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TNFRSF4P43489 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.71■□□□□ 0.75
TNFRSF4P43489 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TNFRSF4P43489 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TNFRSF4P43489 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TNFRSF4P43489 FEM1AP1-201ENST00000431297 1995 ntBASIC19.7■□□□□ 0.74
TNFRSF4P43489 AC092338.2-201ENST00000568827 1415 ntBASIC19.7■□□□□ 0.74
TNFRSF4P43489 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TNFRSF4P43489 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms