Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24■■□□□ 1.43
BRCA1P38398 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24■■□□□ 1.43
BRCA1P38398 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC24■■□□□ 1.43
BRCA1P38398 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC24■■□□□ 1.43
BRCA1P38398 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
BRCA1P38398 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
BRCA1P38398 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24■■□□□ 1.43
BRCA1P38398 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC24■■□□□ 1.43
BRCA1P38398 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC24■■□□□ 1.43
BRCA1P38398 EMBP1-201ENST00000458200 901 ntBASIC24■■□□□ 1.43
BRCA1P38398 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC24■■□□□ 1.43
BRCA1P38398 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC24■■□□□ 1.43
BRCA1P38398 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.99■■□□□ 1.43
BRCA1P38398 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
BRCA1P38398 GUSBP5-202ENST00000510805 1989 ntBASIC23.99■■□□□ 1.43
BRCA1P38398 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.99■■□□□ 1.43
BRCA1P38398 AP000593.1-201ENST00000393668 712 ntBASIC23.99■■□□□ 1.43
BRCA1P38398 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
BRCA1P38398 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.99■■□□□ 1.43
BRCA1P38398 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC23.99■■□□□ 1.43
BRCA1P38398 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
BRCA1P38398 AC244015.2-201ENST00000616358 1861 ntBASIC23.99■■□□□ 1.43
BRCA1P38398 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.99■■□□□ 1.43
BRCA1P38398 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
BRCA1P38398 DPP3P2-201ENST00000416030 1696 ntBASIC23.99■■□□□ 1.43
BRCA1P38398 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
BRCA1P38398 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.98■■□□□ 1.43
BRCA1P38398 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.98■■□□□ 1.43
BRCA1P38398 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.98■■□□□ 1.43
BRCA1P38398 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC23.98■■□□□ 1.43
BRCA1P38398 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.98■■□□□ 1.43
BRCA1P38398 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
BRCA1P38398 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC23.98■■□□□ 1.43
BRCA1P38398 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
BRCA1P38398 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
BRCA1P38398 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.98■■□□□ 1.43
BRCA1P38398 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC23.98■■□□□ 1.43
BRCA1P38398 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
BRCA1P38398 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
BRCA1P38398 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
BRCA1P38398 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
BRCA1P38398 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
BRCA1P38398 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.97■■□□□ 1.43
BRCA1P38398 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.97■■□□□ 1.43
BRCA1P38398 Z98882.1-201ENST00000622160 2253 ntBASIC23.97■■□□□ 1.43
BRCA1P38398 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
BRCA1P38398 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC23.97■■□□□ 1.43
BRCA1P38398 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC23.97■■□□□ 1.43
BRCA1P38398 AC092329.2-201ENST00000598402 547 ntBASIC23.97■■□□□ 1.43
BRCA1P38398 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC23.97■■□□□ 1.43
BRCA1P38398 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
BRCA1P38398 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
BRCA1P38398 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
BRCA1P38398 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
BRCA1P38398 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
BRCA1P38398 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC23.96■■□□□ 1.43
BRCA1P38398 AL845331.1-201ENST00000424978 1190 ntBASIC23.96■■□□□ 1.43
BRCA1P38398 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC23.96■■□□□ 1.43
BRCA1P38398 AC140113.3-201ENST00000605663 199 ntBASIC23.96■■□□□ 1.43
BRCA1P38398 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
BRCA1P38398 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
BRCA1P38398 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.96■■□□□ 1.43
BRCA1P38398 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC23.96■■□□□ 1.43
BRCA1P38398 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.96■■□□□ 1.43
BRCA1P38398 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.96■■□□□ 1.43
BRCA1P38398 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
BRCA1P38398 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.95■■□□□ 1.43
BRCA1P38398 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.95■■□□□ 1.42
BRCA1P38398 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
BRCA1P38398 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
BRCA1P38398 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
BRCA1P38398 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
BRCA1P38398 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.95■■□□□ 1.42
BRCA1P38398 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.95■■□□□ 1.42
BRCA1P38398 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC23.95■■□□□ 1.42
BRCA1P38398 AP002383.4-201ENST00000442518 975 ntBASIC23.95■■□□□ 1.42
BRCA1P38398 AC104692.2-201ENST00000603054 253 ntBASIC23.95■■□□□ 1.42
BRCA1P38398 FGF14-AS2-201ENST00000606448 1074 ntBASIC23.95■■□□□ 1.42
BRCA1P38398 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.95■■□□□ 1.42
BRCA1P38398 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
BRCA1P38398 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC23.95■■□□□ 1.42
BRCA1P38398 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
BRCA1P38398 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.94■■□□□ 1.42
BRCA1P38398 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
BRCA1P38398 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.94■■□□□ 1.42
BRCA1P38398 AL160286.2-201ENST00000567150 934 ntBASIC23.94■■□□□ 1.42
BRCA1P38398 AL024507.2-201ENST00000606070 2574 ntBASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms