Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCANP13611 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCANP13611 STARP1-201ENST00000397973 869 ntBASIC20.36■□□□□ 0.85
VCANP13611 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.36■□□□□ 0.85
VCANP13611 AP001160.2-201ENST00000596071 487 ntBASIC20.36■□□□□ 0.85
VCANP13611 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCANP13611 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.36■□□□□ 0.85
VCANP13611 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VCANP13611 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.36■□□□□ 0.85
VCANP13611 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.35■□□□□ 0.85
VCANP13611 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VCANP13611 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.35■□□□□ 0.85
VCANP13611 POLD2P1-201ENST00000511220 997 ntBASIC20.35■□□□□ 0.85
VCANP13611 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VCANP13611 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
VCANP13611 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
VCANP13611 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.35■□□□□ 0.85
VCANP13611 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCANP13611 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
VCANP13611 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VCANP13611 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.34■□□□□ 0.85
VCANP13611 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.34■□□□□ 0.85
VCANP13611 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
VCANP13611 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.34■□□□□ 0.85
VCANP13611 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VCANP13611 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VCANP13611 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VCANP13611 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.34■□□□□ 0.85
VCANP13611 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.34■□□□□ 0.85
VCANP13611 AC005104.2-201ENST00000427818 678 ntBASIC20.34■□□□□ 0.85
VCANP13611 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.34■□□□□ 0.85
VCANP13611 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.34■□□□□ 0.85
VCANP13611 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCANP13611 HBZP1-201ENST00000354915 429 ntBASIC20.33■□□□□ 0.85
VCANP13611 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VCANP13611 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VCANP13611 NEK4P2-201ENST00000580004 1012 ntBASIC20.33■□□□□ 0.85
VCANP13611 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.33■□□□□ 0.85
VCANP13611 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.33■□□□□ 0.85
VCANP13611 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCANP13611 FAM99A-202ENST00000538190 1989 ntBASIC20.33■□□□□ 0.85
VCANP13611 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCANP13611 HLA-G-203ENST00000376818 1127 ntBASIC20.33■□□□□ 0.84
VCANP13611 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.33■□□□□ 0.84
VCANP13611 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
VCANP13611 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.33■□□□□ 0.84
VCANP13611 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VCANP13611 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.32■□□□□ 0.84
VCANP13611 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.32■□□□□ 0.84
VCANP13611 AC244107.1-201ENST00000442033 332 ntBASIC20.32■□□□□ 0.84
VCANP13611 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.32■□□□□ 0.84
VCANP13611 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.32■□□□□ 0.84
VCANP13611 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.32■□□□□ 0.84
VCANP13611 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.32■□□□□ 0.84
VCANP13611 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VCANP13611 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.32■□□□□ 0.84
VCANP13611 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
VCANP13611 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.32■□□□□ 0.84
VCANP13611 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.32■□□□□ 0.84
VCANP13611 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.32■□□□□ 0.84
VCANP13611 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.32■□□□□ 0.84
VCANP13611 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.32■□□□□ 0.84
VCANP13611 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.32■□□□□ 0.84
VCANP13611 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCANP13611 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.31■□□□□ 0.84
VCANP13611 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.31■□□□□ 0.84
VCANP13611 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.31■□□□□ 0.84
VCANP13611 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.31■□□□□ 0.84
VCANP13611 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms