Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 AC020763.4-201ENST00000623414 4170 ntBASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 MIR663A-201ENST00000385250 93 ntBASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 BX276092.2-201ENST00000417668 665 ntBASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 CDCA4P2-201ENST00000441182 718 ntBASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 AF201337.1-201ENST00000520239 748 ntBASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CPSF4LA6NMK7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CPSF4LA6NMK7 AL032819.2-201ENST00000624543 2162 ntBASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 AL020996.1-203ENST00000536896 2307 ntBASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 AL137784.2-201ENST00000607332 1000 ntBASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CPSF4LA6NMK7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 AC018553.1-201ENST00000616682 1458 ntBASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 AC026185.1-201ENST00000445748 174 ntBASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms