Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CKS1BP1-201ENST00000555221 240 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AL583832.1-201ENST00000603227 784 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC087763.1-201ENST00000603391 286 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC141002.1-201ENST00000607025 279 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 uc_338.18-201ENST00000615451 175 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 MIR8080-201ENST00000622224 89 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC010435.1-201ENST00000623353 1177 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AC007683.2-201ENST00000624681 714 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 AL357562.1-201ENST00000624911 609 ntBASIC5.6□□□□□ -1.51
COL28A1Q2UY09 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
COL28A1Q2UY09 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 SNORD115-48-201ENST00000364764 76 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 MIR765-201ENST00000390226 114 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 PEX12P1-201ENST00000400284 1048 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 SNRPEP6-201ENST00000407465 277 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AL354766.1-201ENST00000423396 542 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RPS26P4-201ENST00000431743 355 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 HMGB3P24-201ENST00000433260 622 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RPL7L1P3-201ENST00000455249 689 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RPS29P22-201ENST00000472363 168 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC027338.1-201ENST00000514840 825 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RNU6-615P-201ENST00000516065 106 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 HMGN2P36-201ENST00000529541 409 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC025857.2-201ENST00000602711 238 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC098483.2-201ENST00000603158 454 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC067838.1-201ENST00000606064 577 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 CR589904.2-201ENST00000612533 440 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC015722.2-201ENST00000622210 551 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AC019080.5-201ENST00000624891 757 ntBASIC5.59□□□□□ -1.51
COL28A1Q2UY09 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL28A1Q2UY09 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
COL28A1Q2UY09 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.59□□□□□ -1.52
COL28A1Q2UY09 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL28A1Q2UY09 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 FBXL21-201ENST00000297158 1305 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC010132.2-201ENST00000295493 1043 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 U8.4-201ENST00000363626 134 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 RN7SKP151-201ENST00000410230 316 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms