Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 CENPIP1-201ENST00000425713 902 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 E2F6P1-201ENST00000428850 745 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AL022331.1-201ENST00000429025 477 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 RPS24P1-201ENST00000438550 371 ntBASIC6.96□□□□□ -1.3
LIG3P49916 RPSAP40-201ENST00000442343 891 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.96□□□□□ -1.3
LIG3P49916 AL354714.5-201ENST00000450131 590 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC079776.3-201ENST00000450665 370 ntBASIC6.96□□□□□ -1.3
LIG3P49916 MTCYBP1-201ENST00000454315 1119 ntBASIC6.96□□□□□ -1.3
LIG3P49916 RN7SL492P-201ENST00000460700 295 ntBASIC6.96□□□□□ -1.3
LIG3P49916 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 SETP11-201ENST00000473027 690 ntBASIC6.96□□□□□ -1.3
LIG3P49916 RN7SL267P-201ENST00000485107 261 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.96□□□□□ -1.3
LIG3P49916 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.96□□□□□ -1.3
LIG3P49916 AC022146.1-201ENST00000595307 847 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC6.96□□□□□ -1.3
LIG3P49916 AC079089.3-201ENST00000603094 673 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC018690.1-201ENST00000608144 626 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC6.96□□□□□ -1.3
LIG3P49916 AC091932.2-201ENST00000623014 291 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AC004836.1-201ENST00000623032 634 ntBASIC6.96□□□□□ -1.3
LIG3P49916 AL160394.1-201ENST00000624765 724 ntBASIC6.96□□□□□ -1.3
LIG3P49916 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.96□□□□□ -1.3
LIG3P49916 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.96□□□□□ -1.3
LIG3P49916 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 DOCK11P1-201ENST00000553480 5932 ntBASIC6.95□□□□□ -1.3
LIG3P49916 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.95□□□□□ -1.3
LIG3P49916 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 Y_RNA.3-201ENST00000362331 103 ntBASIC6.95□□□□□ -1.3
LIG3P49916 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
LIG3P49916 Y_RNA.517-201ENST00000384551 106 ntBASIC6.95□□□□□ -1.3
LIG3P49916 RPL9P21-201ENST00000392269 505 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.95□□□□□ -1.3
LIG3P49916 RN7SKP271-201ENST00000410528 320 ntBASIC6.95□□□□□ -1.3
LIG3P49916 PGBD4P8-201ENST00000412993 562 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AC105402.1-201ENST00000413336 545 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 RPL18AP14-201ENST00000417685 526 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AL672212.1-201ENST00000422246 400 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 MTND1P4-201ENST00000435196 415 ntBASIC6.95□□□□□ -1.3
LIG3P49916 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC092641.1-201ENST00000440229 772 ntBASIC6.95□□□□□ -1.3
LIG3P49916 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.95□□□□□ -1.3
LIG3P49916 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.95□□□□□ -1.3
LIG3P49916 MTND4P18-201ENST00000447010 465 ntBASIC6.95□□□□□ -1.3
LIG3P49916 MTCO2P25-201ENST00000447065 681 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIG3P49916 RANP1-206ENST00000455094 651 ntBASIC6.95□□□□□ -1.3
LIG3P49916 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 PSMC1P13-201ENST00000458195 985 ntBASIC6.95□□□□□ -1.3
LIG3P49916 PPP1R11P1-201ENST00000486095 376 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AL024509.2-201ENST00000493462 493 ntBASIC6.95□□□□□ -1.3
LIG3P49916 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC022447.1-201ENST00000515358 464 ntBASIC6.95□□□□□ -1.3
LIG3P49916 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.95□□□□□ -1.3
LIG3P49916 TBCA-206ENST00000518338 551 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.95□□□□□ -1.3
LIG3P49916 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC6.95□□□□□ -1.3
LIG3P49916 AC007537.1-201ENST00000539347 327 ntBASIC6.95□□□□□ -1.3
LIG3P49916 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC6.95□□□□□ -1.3
LIG3P49916 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms