Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RN7SL290P-201ENST00000578661 300 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 MIR4489-201ENST00000578869 62 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 RN7SL356P-201ENST00000582228 248 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.23□□□□□ -1.57
SHMT2P34897 AC009237.13-201ENST00000603193 276 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 SUMO2P15-201ENST00000604285 278 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 AL137246.1-201ENST00000607072 977 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 AC109583.2-201ENST00000617367 129 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 AC004808.2-201ENST00000627965 773 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.23□□□□□ -1.57
SHMT2P34897 AC136428.4-201ENST00000634254 1155 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
SHMT2P34897 Z83820.1-201ENST00000456978 1499 ntBASIC5.23□□□□□ -1.57
SHMT2P34897 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SHMT2P34897 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.23□□□□□ -1.57
SHMT2P34897 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SHMT2P34897 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SHMT2P34897 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.23□□□□□ -1.57
SHMT2P34897 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
SHMT2P34897 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SHMT2P34897 DBIP1-201ENST00000401435 260 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.22□□□□□ -1.57
SHMT2P34897 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 MARK2P12-201ENST00000420129 585 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SHMT2P34897 RPS26P39-201ENST00000469206 341 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 COPS8P2-201ENST00000473228 627 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.22□□□□□ -1.57
SHMT2P34897 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.22□□□□□ -1.57
SHMT2P34897 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 AP004607.2-201ENST00000533949 322 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 AC090022.1-201ENST00000546569 311 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.22□□□□□ -1.57
SHMT2P34897 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.22□□□□□ -1.57
SHMT2P34897 AC009852.2-201ENST00000567898 485 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 RBM22P1-201ENST00000578589 1214 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.22□□□□□ -1.57
SHMT2P34897 AP000769.2-201ENST00000602344 396 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.22□□□□□ -1.57
SHMT2P34897 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
SHMT2P34897 AC009950.2-201ENST00000636548 183 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SHMT2P34897 AC073869.7-201ENST00000640874 297 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.22□□□□□ -1.57
SHMT2P34897 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SHMT2P34897 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 THAP12P5-201ENST00000405864 2275 ntBASIC5.22□□□□□ -1.57
SHMT2P34897 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.22□□□□□ -1.57
SHMT2P34897 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.22□□□□□ -1.57
SHMT2P34897 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SHMT2P34897 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
SHMT2P34897 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
SHMT2P34897 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SHMT2P34897 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SHMT2P34897 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.21□□□□□ -1.58
SHMT2P34897 AC005294.1-201ENST00000355509 281 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 SNORA67-201ENST00000384423 137 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SHMT2P34897 HSPA8P15-201ENST00000401676 786 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 PPIAP9-201ENST00000403866 498 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.21□□□□□ -1.58
SHMT2P34897 SLC35E1P1-201ENST00000419313 864 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SHMT2P34897 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.21□□□□□ -1.58
SHMT2P34897 TCEA1P3-201ENST00000443005 880 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 RPS26P41-201ENST00000450370 284 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 OR52E3P-201ENST00000452083 936 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.21□□□□□ -1.58
SHMT2P34897 AC024558.1-201ENST00000505008 528 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AC092709.1-201ENST00000521355 1045 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.21□□□□□ -1.58
SHMT2P34897 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.21□□□□□ -1.58
SHMT2P34897 AC004825.1-201ENST00000555068 586 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.21□□□□□ -1.58
SHMT2P34897 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.21□□□□□ -1.58
SHMT2P34897 AC106730.2-201ENST00000566641 540 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SHMT2P34897 MIR7853-201ENST00000584820 132 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AC009027.1-201ENST00000604510 479 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 AL512329.2-201ENST00000607350 548 ntBASIC5.21□□□□□ -1.58
SHMT2P34897 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.21□□□□□ -1.58
SHMT2P34897 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SHMT2P34897 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.21□□□□□ -1.58
SHMT2P34897 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
SHMT2P34897 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.21□□□□□ -1.58
SHMT2P34897 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SHMT2P34897 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.2□□□□□ -1.58
SHMT2P34897 AL078621.3-201ENST00000623707 2042 ntBASIC5.2□□□□□ -1.58
SHMT2P34897 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHMT2P34897 OR4G1P-202ENST00000641173 1788 ntBASIC5.2□□□□□ -1.58
SHMT2P34897 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SHMT2P34897 RNU1-149P-201ENST00000390870 161 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms