Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 LINC02210-201ENST00000444561 288 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXA9P31269 AC104634.1-201ENST00000452720 462 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXA9P31269 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXA9P31269 AC108161.1-201ENST00000461060 402 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 RPS29P22-201ENST00000472363 168 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXA9P31269 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXA9P31269 BRD9P1-201ENST00000529855 560 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXA9P31269 AL390726.5-202ENST00000564800 256 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXA9P31269 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXA9P31269 FAM25E-202ENST00000608562 189 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
HOXA9P31269 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXA9P31269 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.57□□□□□ -1.52
HOXA9P31269 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
HOXA9P31269 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXA9P31269 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXA9P31269 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
HOXA9P31269 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXA9P31269 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXA9P31269 INTS6P1-201ENST00000504674 2530 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 CDY3P-201ENST00000454543 1618 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 Z95114.1-201ENST00000624264 14574 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXA9P31269 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXA9P31269 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXA9P31269 RPS4XP16-201ENST00000427198 791 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 RPL5P2-201ENST00000429598 854 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 AC092647.2-201ENST00000452998 253 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 RPS3AP41-201ENST00000462701 778 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXA9P31269 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXA9P31269 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.56□□□□□ -1.52
HOXA9P31269 RNU6-1334P-201ENST00000516032 105 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 OR8G3P-201ENST00000533406 921 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXA9P31269 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXA9P31269 MIR3934-201ENST00000579806 107 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXA9P31269 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXA9P31269 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 AP000769.2-201ENST00000602344 396 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 AC009237.13-201ENST00000603193 276 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 AC093799.2-201ENST00000610062 578 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 RNA5SP439-201ENST00000617595 124 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 uc_338.7-201ENST00000621834 124 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXA9P31269 AC073869.7-201ENST00000640874 297 ntBASIC5.56□□□□□ -1.52
HOXA9P31269 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.56□□□□□ -1.52
HOXA9P31269 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HOXA9P31269 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXA9P31269 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HOXA9P31269 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXA9P31269 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
HOXA9P31269 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXA9P31269 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA9P31269 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA9P31269 AL035419.1-201ENST00000397037 564 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 NIPA2P1-201ENST00000426223 976 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC009784.1-201ENST00000426484 460 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA9P31269 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 AC058823.1-201ENST00000485315 474 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 RNU6-964P-201ENST00000516524 69 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC012400.1-201ENST00000518452 381 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.55□□□□□ -1.52
HOXA9P31269 AC084824.2-201ENST00000548906 345 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 OR11H3P-201ENST00000554547 982 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 EDDM3DP-201ENST00000554692 434 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 MIR4480-201ENST00000582492 71 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AL353729.2-201ENST00000605859 1249 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC091905.4-201ENST00000623432 202 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC112694.2-201ENST00000623697 768 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC135068.5-201ENST00000624197 983 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC135068.12-201ENST00000637370 931 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA9P31269 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HOXA9P31269 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms