Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 IRF5P1-201ENST00000504852 2164 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.35□□□□□ -1.55
HMGA1P17096 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.35□□□□□ -1.55
HMGA1P17096 SNORA70.6-201ENST00000383934 134 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 RNU11-201ENST00000387069 134 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 CHEK2P3-201ENST00000416118 248 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.35□□□□□ -1.55
HMGA1P17096 MGAT2P2-201ENST00000427194 797 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGA1P17096 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGA1P17096 AL590399.4-201ENST00000436561 601 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 AC006466.1-201ENST00000438721 289 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 AC083982.1-201ENST00000485679 344 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 RN7SL244P-201ENST00000493405 297 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGA1P17096 IMPA1P1-201ENST00000510718 842 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.35□□□□□ -1.55
HMGA1P17096 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGA1P17096 AL360012.1-201ENST00000602813 131 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 AL136295.6-201ENST00000610486 658 ntBASIC5.35□□□□□ -1.55
HMGA1P17096 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.35□□□□□ -1.55
HMGA1P17096 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGA1P17096 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
HMGA1P17096 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.34□□□□□ -1.55
HMGA1P17096 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 CASC19-221ENST00000641309 1382 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 AL353625.1-202ENST00000366273 571 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HMGA1P17096 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.34□□□□□ -1.55
HMGA1P17096 COX6B1P1-201ENST00000415962 213 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 AL360081.1-201ENST00000428299 555 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 BX276092.6-201ENST00000430476 250 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 RPL19P16-201ENST00000433839 588 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 AC090018.1-201ENST00000434369 367 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 BX276092.8-201ENST00000455722 250 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 AC092324.1-201ENST00000468671 324 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 AC140172.1-201ENST00000502928 141 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.34□□□□□ -1.55
HMGA1P17096 AC021193.1-201ENST00000511607 420 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 BTF3P13-201ENST00000513224 490 ntBASIC5.34□□□□□ -1.55
HMGA1P17096 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.34□□□□□ -1.55
HMGA1P17096 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.34□□□□□ -1.55
HMGA1P17096 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.34□□□□□ -1.55
HMGA1P17096 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.34□□□□□ -1.55
HMGA1P17096 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGA1P17096 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGA1P17096 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.56
HMGA1P17096 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
HMGA1P17096 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.56
HMGA1P17096 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.33□□□□□ -1.56
HMGA1P17096 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
HMGA1P17096 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HMGA1P17096 RN7SKP149-201ENST00000363008 344 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.33□□□□□ -1.56
HMGA1P17096 FABP7P2-201ENST00000429946 379 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.33□□□□□ -1.56
HMGA1P17096 MRPS33P2-201ENST00000507850 322 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 AC092709.1-201ENST00000521355 1045 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 AP003080.1-202ENST00000526526 915 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 AC021006.3-201ENST00000530771 192 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 MRPS21P9-201ENST00000571150 257 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.33□□□□□ -1.56
HMGA1P17096 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 AL356752.1-201ENST00000615844 593 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC073342.3-201ENST00000624211 193 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.33□□□□□ -1.56
HMGA1P17096 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
HMGA1P17096 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms