Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC090638.1-201ENST00000498296 909 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 snoU109.5-201ENST00000516231 132 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXD4P09016 CDC42P3-201ENST00000518493 633 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXD4P09016 AL049779.2-201ENST00000553847 315 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AGGF1P7-201ENST00000562369 913 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXD4P09016 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXD4P09016 MIR4311-201ENST00000580794 100 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 MIR3936-201ENST00000584304 110 ntBASIC5.05□□□□□ -1.6
HOXD4P09016 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HOXD4P09016 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
HOXD4P09016 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXD4P09016 CASC19-255ENST00000641733 1385 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
HOXD4P09016 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXD4P09016 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HOXD4P09016 RN7SKP28-201ENST00000364770 305 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 GPS2P1-201ENST00000411761 986 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 CTSL3P-202ENST00000412179 788 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 SLC35E1P1-201ENST00000419313 864 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 RNGTTP1-201ENST00000420965 728 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 TCEA1P3-201ENST00000443005 880 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 RPL7P45-201ENST00000455851 743 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 OR7L1P-201ENST00000456181 380 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 TPT1P1-201ENST00000458495 518 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 RN7SL172P-201ENST00000460535 303 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC004815.1-201ENST00000484185 331 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 UBA52P7-201ENST00000486088 380 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 OR2A3P-201ENST00000493774 953 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC024558.1-201ENST00000505008 528 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 GLUD1P3-202ENST00000508551 200 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.04□□□□□ -1.6
HOXD4P09016 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC127381.1-201ENST00000555979 939 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 H3F3BP2-201ENST00000583907 357 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXD4P09016 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXD4P09016 SUGT1P3-202ENST00000604259 383 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC015712.7-201ENST00000615211 635 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 AC022960.2-201ENST00000616300 666 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXD4P09016 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
HOXD4P09016 AC025574.1-201ENST00000554784 1653 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
HOXD4P09016 MIPEPP2-201ENST00000422560 1819 ntBASIC5.04□□□□□ -1.6
HOXD4P09016 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXD4P09016 AC005224.3-201ENST00000584683 2140 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HOXD4P09016 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXD4P09016 AL645927.1-201ENST00000396783 406 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 NPM1P10-201ENST00000398310 865 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 RN7SKP279-201ENST00000411383 298 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXD4P09016 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXD4P09016 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXD4P09016 AL139148.1-201ENST00000427122 680 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms