Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC027088.4-201ENST00000611559 1947 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC091305.2-201ENST00000624049 1576 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 RNA5SP435-201ENST00000364044 108 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 RN7SKP15-201ENST00000364742 309 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC019205.1-201ENST00000421830 730 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 RNF19BPX-201ENST00000426224 625 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 RPS29P14-201ENST00000431518 171 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 NDUFB4P8-201ENST00000435351 367 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 NDUFS5P5-201ENST00000437256 321 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 PCBP2P1-201ENST00000437262 977 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 RAB28P3-201ENST00000448325 597 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC092865.4-201ENST00000477936 615 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC099521.1-201ENST00000482557 334 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC073610.1-201ENST00000489971 396 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC009120.1-201ENST00000493458 473 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 DUTP7-201ENST00000507982 486 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC025768.1-201ENST00000510057 267 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 Y_RNA.667-201ENST00000516212 107 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC060775.1-201ENST00000518241 520 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC122688.1-201ENST00000541494 223 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC068305.2-201ENST00000550567 1205 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AP001496.3-201ENST00000580230 913 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC090236.2-201ENST00000587933 1101 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 FAM27E4-201ENST00000605259 342 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AL158211.2-201ENST00000607282 395 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NKX3-1Q99801 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AC079298.2-201ENST00000623885 459 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 AP003499.2-201ENST00000624100 483 ntBASIC4.84□□□□□ -1.63
NKX3-1Q99801 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
NKX3-1Q99801 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.84□□□□□ -1.64
NKX3-1Q99801 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
NKX3-1Q99801 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
NKX3-1Q99801 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
NKX3-1Q99801 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
NKX3-1Q99801 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.84□□□□□ -1.64
NKX3-1Q99801 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC009962.1-201ENST00000567327 3813 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 GAPDHP24-201ENST00000328713 983 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 RNA5SP273-201ENST00000362484 113 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 RNA5SP477-201ENST00000362639 119 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 RN7SKP269-201ENST00000365545 319 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 OR6K3-202ENST00000368146 996 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 LYPLA1P3-201ENST00000402650 695 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC079809.1-201ENST00000415468 276 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 HYALP1-201ENST00000417674 1279 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 LINC02210-201ENST00000444561 288 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 CFL1P4-201ENST00000451536 498 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AP002345.1-201ENST00000456493 928 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC018638.3-201ENST00000461273 132 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 MRE11P1-201ENST00000464884 2127 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms