Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AL389925.1-201ENST00000432257 728 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 NPM1P33-201ENST00000438918 872 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 SETP20-201ENST00000457046 852 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 OR11I1P-201ENST00000486033 954 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 RN7SL346P-201ENST00000491561 294 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AP001960.1-201ENST00000506494 658 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC138409.2-202ENST00000507274 458 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC027544.3-201ENST00000535082 757 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC022404.1-201ENST00000555320 273 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 MIR1273E-201ENST00000581165 102 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC012616.1-201ENST00000600294 197 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC132068.1-201ENST00000623805 459 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 SNORA17.5-201ENST00000630429 132 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 FRG1EP-201ENST00000634469 770 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SKA3Q8IX90 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SKA3Q8IX90 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SKA3Q8IX90 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.84□□□□□ -1.64
SKA3Q8IX90 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.84□□□□□ -1.64
SKA3Q8IX90 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC092681.1-201ENST00000297369 291 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AL390119.1-201ENST00000440329 312 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 PSAT1P4-201ENST00000466500 526 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 RPL7P51-201ENST00000490532 749 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 OR2A3P-201ENST00000493774 953 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC104109.1-201ENST00000498563 436 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC091917.2-201ENST00000505002 744 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC020978.7-201ENST00000575953 1187 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AP005403.1-201ENST00000579720 229 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC104695.2-201ENST00000605056 775 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AL118522.2-201ENST00000616045 615 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AL691477.1-201ENST00000624398 162 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC021242.1-201ENST00000507315 2035 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SKA3Q8IX90 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC073136.1-201ENST00000449426 2884 ntBASIC4.83□□□□□ -1.64
SKA3Q8IX90 AC006206.1-201ENST00000544842 3387 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms